Evidence map›Paper›PMID 33655294›Full record

ArticleThe Journal of antimicrobial chemotherapy2021

Phenotypic and genetic barriers to establishment of horizontally transferred genes encoding ribosomal protection proteins.

Kavita Yadav, Linnéa Garoff, Douglas L Huseby, Diarmaid Hughes

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kavita YadavUppsala University, Department of Medical Biochemistry and Microbiology, Biomedical Center, (Box 582), Uppsala S-75123, Sweden.ORCID 0000-0002-2249-0675
Linnéa GaroffUppsala University, Department of Medical Biochemistry and Microbiology, Biomedical Center, (Box 582), Uppsala S-75123, Sweden.
Douglas L HusebyUppsala University, Department of Medical Biochemistry and Microbiology, Biomedical Center, (Box 582), Uppsala S-75123, Sweden.ORCID 0000-0001-9974-578X
Diarmaid HughesUppsala University, Department of Medical Biochemistry and Microbiology, Biomedical Center, (Box 582), Uppsala S-75123, Sweden.ORCID 0000-0002-7456-9182
Uppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRibosomal protection proteins (RPPs) interact with bacterial ribosomes to prevent inhibition of protein synthesis by tetracycline. RPP genes have evolved from a common ancestor into at least 12 distinct classes and spread by horizontal genetic transfer into a wide range of bacteria. Many bacterial genera host RPP genes from multiple classes but tet(M) is the predominant RPP gene found in Escherichia coli.

objectivesWe asked whether phenotypic barriers (low-level resistance, high fitness cost) might constrain the fixation of other RPP genes in E. coli.

methodsWe expressed a diverse set of six different RPP genes in E. coli, including tet(M), and quantified tetracycline susceptibility and growth phenotypes as a function of expression level, and evolvability to overcome identified phenotypic barriers.

resultsThe genes tet(M) and tet(Q) conferred high-level tetracycline resistance without reducing fitness; tet(O) and tet(W) conferred high-level resistance but significantly reduced growth fitness; tetB(P) conferred low-level resistance and while mutants conferring high-level resistance were selectable these had reduced growth fitness; otr(A) did not confer resistance and resistant mutants could not be selected. Evolution experiments suggested that codon usage patterns in tet(O) and tet(W), and transcriptional silencing associated with nucleotide composition in tetB(P), accounted for the observed phenotypic barriers.

conclusionsWith the exception of tet(Q), the data reveal significant phenotypic and genetic barriers to the fixation of additional RPP genes in E. coli.

Indexed as

Ribosomal ProteinsTetracycline ResistanceBacterial ProteinsEscherichia coliPhenotypeBacterial ProteinsRibosomal Proteins

Identifiers

PMID33655294
PMCPMC8120329
OpenAlexW3134242437

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.