Evidence map›Paper›PMID 33654974›Full record

ArticleBio-protocol2019

Analysis of Early Phase HIV-1 Replication and Integration Events by Using Real-time PCR.

Laura Graf, Steven P Moran, Sally Ro, Carlos M C de Noronha, Binshan Shi

Abstract read
In one paragraph

Article in Bio-protocol, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Laura GrafDepartment of Basic and Clinical Sciences, Albany College of Pharmacy and Health Sciences, Albany, New York, USA.
Steven P MoranDepartment of Basic and Clinical Sciences, Albany College of Pharmacy and Health Sciences, Albany, New York, USA.
Sally RoDepartment of Basic and Clinical Sciences, Albany College of Pharmacy and Health Sciences, Albany, New York, USA.
Carlos M C de NoronhaDepartment of Immunology and Microbial Disease, Albany Medical College, Albany, New York, United States of America.
Binshan ShiDepartment of Basic and Clinical Sciences, Albany College of Pharmacy and Health Sciences, Albany, New York, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Upon entry into a host cell, the HIV-1 virus undergoes a series of critical early replication events including reverse transcription, nuclear import, and integration of its cDNA into the host genome. Molecular assays used to detect and analyze changes in HIV-1 early phase replication events are valuable tools in developing potential antiretroviral drugs, as well as studying the pathogenesis of HIV. Described here are the molecular assays utilized to detect and quantify HIV-1 early, intermediate, and late reverse transcription (RT) products. In addition to this, protocols for quantifying HIV-1 2-LTR circle DNA and proviral DNA after integration are also included. In these protocols, the optimized TaqMan Real-time PCR reagent is used to increase assay sensitivity and reproducibility. Furthermore, a nested PCR is applied to HIV-1 integration quantification with increased accuracy.

Indexed as

2-LTR cycle DNAHIV-1IntegrationReal-time PCRReverse transcription

Identifiers

PMID33654974
PMCPMC7854244

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.