Evidence map›Paper›PMID 33654959›Full record

ArticleBio-protocol2019

Agnieszka D'Antonio-Chronowska, Matteo D'Antonio, Kelly A Frazer

Abstract read
In one paragraph

Article in Bio-protocol, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Bio-protocol · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Agnieszka D'Antonio-ChronowskaDepartment of Pediatrics, University of California, San Diego, La Jolla, USA.
Matteo D'AntonioDepartment of Pediatrics, University of California, San Diego, La Jolla, USA.
Kelly A FrazerDepartment of Pediatrics, University of California, San Diego, La Jolla, USA.

Funding

REGULATORY GENOMIC STUDIES IN A COHORT OF IPS CELL DERIVED CARDIOMYOCYTESU01HL107442 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI EVANS, SYLVIA M, FRAZER, KELLY A · 2011 to 2016
$9.8M
Molecular Basis of Hereditary Retinal DegenerationsR01EY021237 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AYYAGARI, RADHA · 2011 to 2020
$5.6M
Functional Analysis of T2D Associated Non-coding SNPsU01DK105541 · NIDDK · LUDWIG INSTITUTE FOR CANCER RES LTD · PI FRAZER, KELLY A, REN, BING · 2015 to 2019
$4.6M
Molecular Mechanisms Underlying Macular DegenerationsR01EY013198 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI AYYAGARI, RADHA · 2001 to 2011
$4.0M
Fine-mapping and functional analysis of T1D-associated variantsDP3DK112155 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FRAZER, KELLY A, SANDER, MAIKE · 2016 to 2016
$3.3M
Commercialization of HaploSeq as a Service (HaaS) for generating chromosome-span phased genome and exome sequence informationR44HG008118 · NHGRI · ARIMA GENOMICS, INC. · PI DIXON, JESSE R, LAURENT, LOUISE CHANG · 2018 to 2019
$1.7M
Optimizing HaploSeq for whole-genome phased haplotypes in biomedical applicationsR41HG008118 · NHGRI · ARIMA GENOMICS, LLC · PI FRAZER, KELLY A, HEINTZMAN, NATE · 2015 to 2016
$822k
NEI NIH HHS R01 EY013198NEI NIH HHS R01 EY021237NHGRI NIH HHS R41 HG008118NHGRI NIH HHS R44 HG008118NHLBI NIH HHS U01 HL107442NIDDK NIH HHS DP3 DK112155NIDDK NIH HHS U01 DK105541
6 · The paper itself

Abstract

Induced Pluripotent Stem Cells (iPSCs) serve as an excellent model system for studying the molecular underpinnings of tissue development. Human iPSC-derived retinal pigment epithelium (iPSC-RPE) cells have fetal-like molecular profiles. Hence, biobanks like iPSCORE, which contain iPSCs generated from hundreds of individuals, are an invaluable resource for examining how common genetic variants exert their effects during RPE development resulting in individuals having different propensities to develop Age-related Macular Degeneration (AMD) as adults. Here, we present an optimized, cost-effective and highly reproducible protocol for derivation of human iPSC-RPE cells using small molecules under serum-free condition and for their quality control using flow cytometry and immunofluorescence. While most previous protocols have required laborious manual selection to enrich for iPSC-RPE cells, our protocol uses whole culture passaging and yields a large number of iPSC-RPE cells with high purity (88-98.1% ZO-1 and MiTF double positive cells). The simplicity and robustness of this protocol would enable its adaption for high-throughput applications involving the generation of iPSC-RPE samples from hundreds of individuals.

Indexed as

Age-related macular degeneration (AMD)DifferentiationGenetic studiesGenetic variantHuman induced pluripotent stem cell-derived retinal pigment epithelium (hiPSC-RPE)Human induced pluripotent stem (hiPSC)Retinal pigment epithelium (RPE)Small molecules

Identifiers

PMID33654959
PMCPMC7853967

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.