Evidence map›Paper›PMID 33654076›Full record

ArticleNature communications2021

Structure-function analysis of oncogenic EGFR Kinase Domain Duplication reveals insights into activation and a potential approach for therapeutic targeting.

Zhenfang Du, Benjamin P Brown, Soyeon Kim, Donna Ferguson, Dean C Pavlick, Gowtham Jayakumaran, Ryma Benayed, Jean-Nicolas Gallant, Yun-Kai Zhang, Yingjun Yan and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. The role of kinase domain dimerization in EGFR activation.Structure (London, England : 1993) · 2026
    Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Analysis of EGFR binding hotspots for design of new EGFR inhibitory biologics.Protein science : a publication of the Protein Society · 2024
    Review
  17. HER4 is a high-affinity dimerization partner for all EGFR/HER/ErbB family proteins.Protein science : a publication of the Protein Society · 2024
    Article
  18. Article
  19. Observational
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Zhenfang Du *Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.ORCID 0000-0001-6364-1321
Benjamin P Brown *Chemical and Physical Biology Program, Vanderbilt University, Nashville, TN, USA.
Soyeon KimDepartment of Chemistry, University of Akron, Akron, OH, USA.
Donna FergusonDepartment of Molecular Pathology, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.
Dean C PavlickFoundation Medicine, Inc., Cambridge, MA, USA.
Gowtham JayakumaranDepartment of Molecular Pathology, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.
Ryma BenayedDepartment of Molecular Pathology, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.ORCID 0000-0002-3754-0321
Jean-Nicolas GallantDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.ORCID 0000-0003-4696-2013
Yun-Kai ZhangDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Yingjun YanDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Monica Red-BrewerDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Siraj M AliFoundation Medicine, Inc., Cambridge, MA, USA.
Alexa B SchrockFoundation Medicine, Inc., Cambridge, MA, USA.
Ahmet ZehirDepartment of Molecular Pathology, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.ORCID 0000-0001-5406-4104
Marc LadanyiDepartment of Molecular Pathology, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.
Adam W SmithDepartment of Chemistry, University of Akron, Akron, OH, USA.
Jens MeilerDepartment of Chemistry, Vanderbilt University, Nashville, TN, USA. jens.meiler@vanderbilt.edu.
Christine M LovlyDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA. christine.lovly@vumc.org.ORCID 0000-0002-3641-6361

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
The Role of Focal Oncogene Amplifications in Lung CancerP01CA129243 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Andrea Ventura · 2007 to 2026
$31.2M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007347 · NIGMS · VANDERBILT UNIVERSITY · PI WILLIAMS, CHRISTOPHER S. · 1985 to 2023
$26.3M
ROSETTA An Integrated Protein Structure Modeling SuiteR01GM073151 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KUHLMAN, BRIAN A · 2005 to 2019
$7.8M
ECOG-ACRIN Thoracic Malignancies Integrated Translational Science CenterUG1CA233259 · NCI · EMORY UNIVERSITY · PI CARBONE, DAVID P., LEAL, TICIANA · 2019 to 2025
$5.1M
Medical Scientist Training ProgramT32GM152284 · NIGMS · VANDERBILT UNIVERSITY · PI Christopher S. Williams · 2024 to 2026
$4.8M
Membrane Protein Structure Elucidation from sparse NMR data (KAMP)R01GM080403 · NIGMS · VANDERBILT UNIVERSITY · PI MEILER, JENS · 2007 to 2019
$3.0M
Mechanistic insights into Variants of Uncertain Significance (VUS) using novel EGFR variants as a paradigmR01CA227833 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI LOVLY, CHRISTINE M., MEILER, JENS · 2019 to 2023
$1.7M
Computational Design of Protein-Ligand Interfaces - a Therapeutic StrategyR01GM099842 · NIGMS · VANDERBILT UNIVERSITY · PI MEILER, JENS · 2012 to 2015
$1.3M
Targeting receptor tyrosine kinases with novel methods in computer-aided drug discovery for the treatment of fibrotic renal diseaseF30DK118774 · NIDDK · VANDERBILT UNIVERSITY · PI BROWN, BENJAMIN PATRICK · 2018 to 2021
$162k
NCI NIH HHS P01 CA129243NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA068485NCI NIH HHS R01 CA227833NCI NIH HHS UG1 CA233259NIDDK NIH HHS F30 DK118774NIGMS NIH HHS R01 GM073151NIGMS NIH HHS R01 GM080403NIGMS NIH HHS R01 GM099842NIGMS NIH HHS T32 GM007347NIGMS NIH HHS T32 GM152284
6 · The paper itself

Abstract

Mechanistic understanding of oncogenic variants facilitates the development and optimization of treatment strategies. We recently identified in-frame, tandem duplication of EGFR exons 18 - 25, which causes EGFR Kinase Domain Duplication (EGFR-KDD). Here, we characterize the prevalence of ERBB family KDDs across multiple human cancers and evaluate the functional biochemistry of EGFR-KDD as it relates to pathogenesis and potential therapeutic intervention. We provide computational and experimental evidence that EGFR-KDD functions by forming asymmetric EGF-independent intra-molecular and EGF-dependent inter-molecular dimers. Time-resolved fluorescence microscopy and co-immunoprecipitation reveals EGFR-KDD can form ligand-dependent inter-molecular homo- and hetero-dimers/multimers. Furthermore, we show that inhibition of EGFR-KDD activity is maximally achieved by blocking both intra- and inter-molecular dimerization. Collectively, our findings define a previously unrecognized model of EGFR dimerization, providing important insights for the understanding of EGFR activation mechanisms and informing personalized treatment of patients with tumors harboring EGFR-KDD. Finally, we establish ERBB KDDs as recurrent oncogenic events in multiple cancers.

Indexed as

Gene DuplicationMolecular Targeted TherapyOncogenesAmino Acid SequenceAnimalsCell LineCell ProliferationEpitopesErbB ReceptorsLigandsMiceNeoplasmsPhosphorylationProtein BindingProtein DomainsProtein MultimerizationEpitopesErbB ReceptorsLigands

Identifiers

PMID33654076
PMCPMC7925532

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.