Evidence map›Paper›PMID 33653956›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Machine learning active-nematic hydrodynamics.

Jonathan Colen, Ming Han, Rui Zhang, Steven A Redford, Linnea M Lemma, Link Morgan, Paul V Ruijgrok, Raymond Adkins, Zev Bryant, Zvonimir Dogic and 3 more

Erratum issuedAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Physics-tailored machine learning reveals unexpected physics in dusty plasmas.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. The 2025 motile active matter roadmap.Journal of physics. Condensed matter : an Institute of Physics journal · 2025
    Review
  5. A hitchhiker's guide to active motion.The European physical journal. E, Soft matter · 2025
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Learning hydrodynamic equations for active matter from particle simulations and experiments.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Learning active nematics one step at a time.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Jonathan ColenDepartment of Physics, University of Chicago, Chicago, IL 60637.ORCID 0000-0003-4162-0276
Ming HanJames Franck Institute, University of Chicago, Chicago, IL 60637.ORCID 0000-0002-9108-8364
Rui ZhangPritzer School of Molecular Engineering, University of Chicago, Chicago, IL 60637.
Steven A RedfordJames Franck Institute, University of Chicago, Chicago, IL 60637.ORCID 0000-0003-1149-9401
Linnea M LemmaDepartment of Physics, Brandeis University, Waltham, MA 02454.ORCID 0000-0001-8482-4573
Link MorganDepartment of Physics, University of California, Santa Barbara, CA 92111.
Paul V RuijgrokDepartment of Bioengineering, Stanford University, Stanford, CA 94305.
Raymond AdkinsDepartment of Physics, University of California, Santa Barbara, CA 92111.ORCID 0000-0002-2393-6114
Zev BryantDepartment of Bioengineering, Stanford University, Stanford, CA 94305.
Zvonimir DogicDepartment of Physics, University of California, Santa Barbara, CA 92111.
Margaret L GardelDepartment of Physics, University of Chicago, Chicago, IL 60637.ORCID 0000-0003-1846-9854
Juan J de PabloPritzer School of Molecular Engineering, University of Chicago, Chicago, IL 60637; vitelli@uchicago.edu depablo@uchicago.edu.
Vincenzo VitelliDepartment of Physics, University of Chicago, Chicago, IL 60637; vitelli@uchicago.edu depablo@uchicago.edu.

Funding

Graduate Program in Biophysical Sciences at the University of Chicago - Renewal 0T32EB009412 · NIBIB · UNIVERSITY OF CHICAGO · PI ENGEL, GREGORY S, SOSNICK, TOBIN R · 2009 to 2023
$4.9M
Engineering Cytoskeletal MotorsR01GM114627 · NIGMS · STANFORD UNIVERSITY · PI BRYANT, ZEV · 2018 to 2021
$1.3M
NIGMS NIH HHS R01 GM114627
6 · The paper itself

Abstract

Hydrodynamic theories effectively describe many-body systems out of equilibrium in terms of a few macroscopic parameters. However, such parameters are difficult to determine from microscopic information. Seldom is this challenge more apparent than in active matter, where the hydrodynamic parameters are in fact fields that encode the distribution of energy-injecting microscopic components. Here, we use active nematics to demonstrate that neural networks can map out the spatiotemporal variation of multiple hydrodynamic parameters and forecast the chaotic dynamics of these systems. We analyze biofilament/molecular-motor experiments with microtubule/kinesin and actin/myosin complexes as computer vision problems. Our algorithms can determine how activity and elastic moduli change as a function of space and time, as well as adenosine triphosphate (ATP) or motor concentration. The only input needed is the orientation of the biofilaments and not the coupled velocity field which is harder to access in experiments. We can also forecast the evolution of these chaotic many-body systems solely from image sequences of their past using a combination of autoencoders and recurrent neural networks with residual architecture. In realistic experimental setups for which the initial conditions are not perfectly known, our physics-inspired machine-learning algorithms can surpass deterministic simulations. Our study paves the way for artificial-intelligence characterization and control of coupled chaotic fields in diverse physical and biological systems, even in the absence of knowledge of the underlying dynamics.

Indexed as

HydrodynamicsMachine Learningactive turbulencebiomaterialsdeep learningliquid crystalstopological defects

Identifiers

PMID33653956
PMCPMC7958379

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.