Evidence map›Paper›PMID 33652023›Full record

ArticleThe Journal of biological chemistry

Characterization of a nitrite-reducing octaheme hydroxylamine oxidoreductase that lacks the tyrosine cross-link.

Christina Ferousi, Rob A Schmitz, Wouter J Maalcke, Simon Lindhoud, Wouter Versantvoort, Mike S M Jetten, Joachim Reimann, Boran Kartal

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 37 citations in OpenAlex.

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  7. "Applied and environmental microbiology · 2023
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  14. NHMicrobes and environments · 2022
    Article
  15. Article
  16. Specificity of SmallACS omega · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Christina FerousiDepartment of Microbiology, Institute for Water and Wetland Research, Radboud University, Nijmegen, The Netherlands.
Rob A SchmitzDepartment of Microbiology, Institute for Water and Wetland Research, Radboud University, Nijmegen, The Netherlands.
Wouter J MaalckeDepartment of Microbiology, Institute for Water and Wetland Research, Radboud University, Nijmegen, The Netherlands.
Simon LindhoudDepartment of Microbiology, Institute for Water and Wetland Research, Radboud University, Nijmegen, The Netherlands.
Wouter VersantvoortDepartment of Microbiology, Institute for Water and Wetland Research, Radboud University, Nijmegen, The Netherlands.
Mike S M JettenDepartment of Microbiology, Institute for Water and Wetland Research, Radboud University, Nijmegen, The Netherlands.
Joachim ReimannDepartment of Microbiology, Institute for Water and Wetland Research, Radboud University, Nijmegen, The Netherlands.
Boran KartalMicrobial Physiology Group, Max Planck Institute for Marine Microbiology, Bremen, Germany. Electronic address: bkartal@mpi-bremen.de.
Radboud University Nijmegen · NLMax Planck Institute for Marine Microbiology · DE

Funding

European Research Council 339880
6 · The paper itself

Abstract

The hydroxylamine oxidoreductase (HAO) family consists of octaheme proteins that harbor seven bis-His ligated electron-transferring hemes and one 5-coordinate catalytic heme with His axial ligation. Oxidative HAOs have a homotrimeric configuration with the monomers covalently attached to each other via a unique double cross-link between a Tyr residue and the catalytic heme moiety of an adjacent subunit. This cross-linked active site heme, termed the P460 cofactor, has been hypothesized to modulate enzyme reactivity toward oxidative catalysis. Conversely, the absence of this cross-link is predicted to favor reductive catalysis. However, this prediction has not been directly tested. In this study, an HAO homolog that lacks the heme-Tyr cross-link (HAOr) was purified to homogeneity from the nitrite-dependent anaerobic ammonium-oxidizing (anammox) bacterium Kuenenia stuttgartiensis, and its catalytic and spectroscopic properties were assessed. We show that HAOr reduced nitrite to nitric oxide and also reduced nitric oxide and hydroxylamine as nonphysiological substrates. In contrast, HAOr was not able to oxidize hydroxylamine or hydrazine supporting the notion that cross-link-deficient HAO enzymes are reductases. Compared with oxidative HAOs, we found that HAOr harbors an active site heme with a higher (at least 80 mV) midpoint potential and a much lower degree of porphyrin ruffling. Based on the physiology of anammox bacteria and our results, we propose that HAOr reduces nitrite to nitric oxide in vivo, providing anammox bacteria with NO, which they use to activate ammonium in the absence of oxygen.

Indexed as

Ammonium CompoundsBacteriaCatalysisCatalytic DomainElectron TransportHemeHydrazinesHydroxylamineHydroxylaminesNitric OxideNitritesOxidation-ReductionOxidoreductasesPlanctomycetalesTyrosineAmmonium CompoundsHemehydrazineHydrazinesHydroxylaminehydroxylamine dehydrogenaseHydroxylaminesNitric OxideNitritesOxidoreductasesTyrosineanammoxcytochrome cHAOhemehydroxylamine oxidoreductasenitric oxidenitrite reductasenitrite reductionredoxtyrosine cross-link

Identifiers

PMID33652023
PMCPMC8042395
OpenAlexW3134970459

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.