Evidence map›Paper›PMID 33651880›Full record

ArticleThe Journal of experimental medicine2021

Single-cell analyses identify circulating anti-tumor CD8 T cells and markers for their enrichment.

Kristen E Pauken, Osmaan Shahid, Kaitlyn A Lagattuta, Kelly M Mahuron, Jacob M Luber, Margaret M Lowe, Linglin Huang, Conor Delaney, Jaclyn M Long, Megan E Fung and 11 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 123 citations in OpenAlex.

  1. A Phase II Trial of Guadecitabine plus Atezolizumab in Metastatic Urothelial Carcinoma Progressing after Initial Immune Checkpoint Inhibitor Therapy.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Trial
  2. Article
  3. Review
  4. Article
  5. Targeting TMED4 enhances CD8Science advances · 2026
    Article
  6. Article
  7. Review
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  20. A Dapl1Science advances · 2025
    Article

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 1 country.

Kristen E Pauken *Department of Immunology, Blavatnik Institute, Harvard Medical School, Boston, MA.
Osmaan Shahid *Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA.
Kaitlyn A Lagattuta *Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA.
Kelly M Mahuron *Department of Surgery, University of California, San Francisco, San Francisco, CA.
Jacob M Luber *Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA.
Margaret M LoweDepartment of Dermatology, University of California, San Francisco, San Francisco, CA.
Linglin HuangDepartment of Data Sciences, Dana-Farber Cancer Institute, Boston, MA.
Conor DelaneyDepartment of Data Sciences, Dana-Farber Cancer Institute, Boston, MA.
Jaclyn M LongDepartment of Immunology, Blavatnik Institute, Harvard Medical School, Boston, MA.
Megan E FungDepartment of Data Sciences, Dana-Farber Cancer Institute, Boston, MA.
Kathleen NewcomerDepartment of Data Sciences, Dana-Farber Cancer Institute, Boston, MA.
Katy K TsaiDepartment of Medicine, University of California, San Francisco, San Francisco, CA.
Melissa ChowHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA.
Samantha GuinnDepartment of Immunology, Blavatnik Institute, Harvard Medical School, Boston, MA.
Juhi R KuchrooDepartment of Immunology, Blavatnik Institute, Harvard Medical School, Boston, MA.
Kelly P BurkeDepartment of Immunology, Blavatnik Institute, Harvard Medical School, Boston, MA.
Jason M SchenkelKoch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA.
Michael D RosenblumDepartment of Dermatology, University of California, San Francisco, San Francisco, CA.
Adil I DaudDepartment of Medicine, University of California, San Francisco, San Francisco, CA.
Arlene H SharpeDepartment of Immunology, Blavatnik Institute, Harvard Medical School, Boston, MA.
Meromit SingerDepartment of Immunology, Blavatnik Institute, Harvard Medical School, Boston, MA.
Brigham and Women's Hospital · USUniversity of California, San Francisco · USDana-Farber Cancer Institute · USBroad Institute · USHarvard University · US

Funding

Role of Negative Costimulation in Regulation of AutoimmunityP01AI039671 · NIAID · YALE UNIVERSITY · PI David A. Hafler · 1996 to 2026
$51.7M
Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Transgenic/KnockoutP01AI056299 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI SHARPE, ARLENE H. · 2003 to 2023
$42.5M
Synergies among inhibitory receptors in tolerance, cancer & antiviral immunityP01AI108545 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI E. John Wherry · 2015 to 2026
$30.8M
Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KRUMMEL, MATTHEW F · 2003 to 2019
$21.8M
Physician Scientist Training in Cancer ResearchT32CA009172 · NCI · DANA-FARBER CANCER INSTITUTE · PI Jennifer R Brown, James A. DeCaprio · 1985 to 2026
$17.1M
Training Program in Bioinformatics and Integrative GenomicsT32HG002295 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Peter J Park · 2001 to 2026
$15.8M
MOLECULAR AND CELLULAR IMMUNOLOGYT32AI007334 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CYSTER, JASON G · 1988 to 2023
$11.0M
Systems Pharmacology of Therapeutic and Adverse Responses to ImmuneCheckpoint and Small Molecule DrugsU54CA225088 · NCI · HARVARD MEDICAL SCHOOL · PI HAIGIS, MARCIA · 2018 to 2022
$10.8M
RESEARCH TRAINING IN GASTROINTESTINAL SURGERYT32DK007573 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HARRIS, HOBART WHITAKER · 1988 to 2019
$3.0M
Abbreviated targeted therapy to improve anti-PD-1 inhibitor efficacy in melanomaR01CA229851 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI SHARPE, ARLENE H., SULLIVAN, RYAN J · 2018 to 2021
$1.5M
BD FACSAria Fusion Cell SorterS10OD021822 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LEE, MICHAEL R. · 2016 to 2016
$573k
NCI NIH HHS R01 CA229851NCI NIH HHS T32 CA009172NCI NIH HHS U54 CA225088NHGRI NIH HHS T32 HG002295NIAID NIH HHS P01 AI039671NIAID NIH HHS P01 AI056299NIAID NIH HHS P01 AI108545NIAID NIH HHS T32 AI007334NIDDK NIH HHS P30 DK063720NIDDK NIH HHS T32 DK007573NIGMS NIH HHS T32 GM007753NIH HHS S10 OD021822
6 · The paper itself

Abstract

The ability to monitor anti-tumor CD8+ T cell responses in the blood has tremendous therapeutic potential. Here, we used paired single-cell RNA and TCR sequencing to detect and characterize "tumor-matching" (TM) CD8+ T cells in the blood of mice with MC38 tumors or melanoma patients using the TCR as a molecular barcode. TM cells showed increased activation compared with nonmatching T cells in blood and were less exhausted than matching cells in tumors. Importantly, PD-1, which has been used to identify putative circulating anti-tumor CD8+ T cells, showed poor sensitivity for identifying TM cells. By leveraging the transcriptome, we identified candidate cell surface markers for TM cells in mice and patients and validated NKG2D, CD39, and CX3CR1 in mice. These data show that the TCR can be used to identify tumor-relevant cells for characterization, reveal unique transcriptional properties of TM cells, and develop marker panels for tracking and analysis of these cells.

Indexed as

AdenocarcinomaAnimalsBiomarkers, TumorCD8-Positive T-LymphocytesCell Line, TumorColonic NeoplasmsFemaleHumansMelanomaMiceMice, Inbred C57BLProgrammed Cell Death 1 ReceptorReceptors, Antigen, T-CellSingle-Cell AnalysisSkin NeoplasmsTranscriptomeBiomarkers, TumorPDCD1 protein, humanPdcd1 protein, mouseProgrammed Cell Death 1 ReceptorReceptors, Antigen, T-Cell

Identifiers

PMID33651880
PMCPMC7933992
OpenAlexW3133736305

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.