Evidence map›Paper›PMID 33651310›Full record

ArticleNeuroinformatics2022

Excavating FAIR Data: the Case of the Multicenter Animal Spinal Cord Injury Study (MASCIS), Blood Pressure, and Neuro-Recovery.

Carlos A Almeida, Abel Torres-Espin, J Russell Huie, Dongming Sun, Linda J Noble-Haeusslein, Wise Young, Michael S Beattie, Jacqueline C Bresnahan, Jessica L Nielson, Adam R Ferguson

Open access · hybridAbstract readMulticenter Study
In one paragraph

Article in Neuroinformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Revisiting the critical roles of reactive microglia in traumatic brain injury.International journal of surgery (London, England) · 2025
    Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Increasing Rigor of Preclinical Research to Maximize Opportunities for Translation.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2023
    Review
  10. Review
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Carlos A AlmeidaDepartment of Neurological Surgery, Weill Institute for Neurosciences, Brain and Spinal Injury Center, University of California San Francisco, San Francisco, CA, USA.
Abel Torres-EspinDepartment of Neurological Surgery, Weill Institute for Neurosciences, Brain and Spinal Injury Center, University of California San Francisco, San Francisco, CA, USA.
J Russell HuieDepartment of Neurological Surgery, Weill Institute for Neurosciences, Brain and Spinal Injury Center, University of California San Francisco, San Francisco, CA, USA.
Dongming SunW.M. Keck Center for Collaborative Neuroscience, Rutgers University, New Brunswick, NJ, USA.
Linda J Noble-HaeussleinDepartment of Neurology, University of Texas, Austin, TX, USA.
Wise YoungW.M. Keck Center for Collaborative Neuroscience, Rutgers University, New Brunswick, NJ, USA.
Michael S BeattieDepartment of Neurological Surgery, Weill Institute for Neurosciences, Brain and Spinal Injury Center, University of California San Francisco, San Francisco, CA, USA.
Jacqueline C BresnahanDepartment of Neurological Surgery, Weill Institute for Neurosciences, Brain and Spinal Injury Center, University of California San Francisco, San Francisco, CA, USA.
Jessica L NielsonDepartment of Psychiatry and Behavioral Sciences, University of Minnesota, Minneapolis, MN, USA. jnielson@umn.edu.
Adam R FergusonDepartment of Neurological Surgery, Weill Institute for Neurosciences, Brain and Spinal Injury Center, University of California San Francisco, San Francisco, CA, USA. adam.ferguson@ucsf.edu.ORCID http://orcid.org/0000-0001-7102-1608
University of California, San Francisco · USRutgers, The State University of New Jersey · USThe University of Texas at Austin · USUniversity of Minnesota · US

Funding

University of Minnesota Clinical and Translational Science Institute (UMN CTSI)UL1TR002494 · NCATS · UNIVERSITY OF MINNESOTA · PI BLAZAR, BRUCE R, WEISDORF, DANIEL J · 2018 to 2022
$34.9M
Tools for Common Data Element Adoption in the Pan-Neurotrauma Data Commons (PANORAUMA)U24NS122732 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ADAM R FERGUSON, Jeffrey S. Grethe · 2021 to 2026
$5.0M
Maladaptive Plasticity in Spinal Cord Injury: Cellular MechanismsR01NS122888 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERGUSON, ADAM R · 2021 to 2025
$3.0M
Bioinformatics for post-traumatic stressR01MH116156 · NIMH · UNIVERSITY OF MINNESOTA · PI NIELSON, JESSICA LEIGH · 2018 to 2022
$2.6M
Maladaptive Plasticity in Spinal Cord Injury: Cellular MechanismsR01NS088475 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERGUSON, ADAM R · 2015 to 2019
$1.7M
Metaplasticity and Recovery After Spinal Cord Injury: Cellular MechanismsR01NS069537 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERGUSON, ADAM R · 2010 to 2012
$981k
SCI Consortium Study: Harnessing big-data for plasticity and rehabilitation in translational SCII01RX002245 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI ADAM R FERGUSON · 2017 to 2026
–
Leveraging data-science for discovery in chronic TBII01RX002787 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI FERGUSON, ADAM R · 2018 to 2025
–
NCATS NIH HHS UL1 TR002494NIMH NIH HHS R01 MH116156NINDS NIH HHS R01 NS069537NINDS NIH HHS R01 NS088475NINDS NIH HHS R01 NS122888NINDS NIH HHS U24 NS122732RRD VA I01 RX002245RRD VA I01 RX002787
6 · The paper itself

Abstract

Meta-analyses suggest that the published literature represents only a small minority of the total data collected in biomedical research, with most becoming 'dark data' unreported in the literature. Dark data is due to publication bias toward novel results that confirm investigator hypotheses and omission of data that do not. Publication bias contributes to scientific irreproducibility and failures in bench-to-bedside translation. Sharing dark data by making it Findable, Accessible, Interoperable, and Reusable (FAIR) may reduce the burden of irreproducible science by increasing transparency and support data-driven discoveries beyond the lifecycle of the original study. We illustrate feasibility of dark data sharing by recovering original raw data from the Multicenter Animal Spinal Cord Injury Study (MASCIS), an NIH-funded multi-site preclinical drug trial conducted in the 1990s that tested efficacy of several therapies after a spinal cord injury (SCI). The original drug treatments did not produce clear positive results and MASCIS data were stored in boxes for more than two decades. The goal of the present study was to independently confirm published machine learning findings that perioperative blood pressure is a major predictor of SCI neuromotor outcome (Nielson et al., 2015). We recovered, digitized, and curated the data from 1125 rats from MASCIS. Analyses indicated that high perioperative blood pressure at the time of SCI is associated with poorer health and worse neuromotor outcomes in more severe SCI, whereas low perioperative blood pressure is associated with poorer health and worse neuromotor outcome in moderate SCI. These findings confirm and expand prior results that a narrow window of blood-pressure control optimizes outcome, and demonstrate the value of recovering dark data for assessing reproducibility of findings with implications for precision therapeutic approaches.

Indexed as

Spinal Cord InjuriesAnimalsBlood PressureRatsReproducibility of ResultsAutonomicData scienceHemodynamicsMetascienceMotor recoveryNeurotraumaReproducibilitySpinal contusion

Identifiers

PMID33651310
PMCPMC9015816
OpenAlexW3133587444

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.