Evidence map›Paper›PMID 33651131›Full record

ArticleApplied microbiology and biotechnology2021

Characterization of a Bacillus megaterium strain with metal bioremediation potential and in silico discovery of novel cadmium binding motifs in the regulator, CadC.

Weerasingha Mudiyanselage Nilmini Hasintha Kumari, Shalini Thiruchittampalam, Mahinagoda Siril Samantha Weerasinghe, Naduviladath Vishvanath Chandrasekharan, Champika Dilrukshi Wijayarathna

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Article in Applied microbiology and biotechnology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. A Portable Arsenic Sensor IntegratingACS synthetic biology · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Weerasingha Mudiyanselage Nilmini Hasintha KumariBiotechnology Laboratory, Department of Chemistry, Faculty of Science, University of Colombo, Colombo 03, Sri Lanka.
Shalini ThiruchittampalamComputational Chemistry Laboratory, Department of Chemistry, Faculty of Science, University of Colombo, Colombo 03, Sri Lanka.
Mahinagoda Siril Samantha WeerasingheComputational Chemistry Laboratory, Department of Chemistry, Faculty of Science, University of Colombo, Colombo 03, Sri Lanka.
Naduviladath Vishvanath ChandrasekharanBiotechnology Laboratory, Department of Chemistry, Faculty of Science, University of Colombo, Colombo 03, Sri Lanka.
Champika Dilrukshi WijayarathnaBiotechnology Laboratory, Department of Chemistry, Faculty of Science, University of Colombo, Colombo 03, Sri Lanka. dilruksh@chem.cmb.ac.lk.ORCID http://orcid.org/0000-0002-6300-5138

Funding

National Science Foundation RG/2012/BT/08
6 · The paper itself

Abstract

Bioremediation of toxic metal ions using bacterial strains is a promising tool. Metal binding motifs in microbial proteins are involved in the regulation and transport of such toxic metals for metal detoxification. A bacterial strain designated TWSL_4 with metal (Cu, Cd, and Pb) resistance and removal ability was isolated and identified as a Bacillus megaterium strain using 16S rRNA gene analysis. An operon with 2 open reading frames (ORFs) was identified, cloned, and sequenced. ORF1 and ORF2 were identical to the cadmium efflux system accessory protein (CadC) and cadmium-translocating P-type ATPases (CadA) of B. megaterium strain YC4-R4 respectively. A protein homology search using Swiss model retrieved no crystal structures for CadC and CadA of Bacillus sp.. CadC of TWSL_4 had a sequence identity of 53% to the CadC (121aa) protein and 51.69% to the CadC crystal structure (1U2W.1.B; GMQE=0.75) of Staphylococcus sp. pI258. Molecular dynamic simulation studies revealed the presence of three metal binding regions in CadC of TWSL_4, [ASP7-TYR9], [ASP100-HIS102], and [LYS113-ASP116]. This is the first report showing evidence for the presence of Cd

Indexed as

Bacillus megateriumCadmiumBacterial ProteinsBiodegradation, EnvironmentalComputer SimulationRepressor ProteinsRNA, Ribosomal, 16SStaphylococcus aureusBacterial ProteinsCadmiumRepressor ProteinsRNA, Ribosomal, 16SBacillus megateriumBioremediation potentialCadACadCMetal binding motifsMolecular dynamics simulation

Identifiers

PMID33651131

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.