Evidence map›Paper›PMID 33650800›Full record

ArticleMicrobiologyOpen2021

Functional and structural characterization of Hyp730, a highly conserved and dormancy-specific hypothetical membrane protein.

Stewart Fannin, Jonathan Rangel, Abiodun P Bodurin, Tannon Yu, Brandon Mistretta, Sujina Mali, Preethi Gunaratne, Steven J Bark, Jerry O Ebalunode, Arshad Khan and 2 more

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Biomolecules · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Stewart FanninDepartment of Biology and Biochemistry, University of Houston, Houston, TX, USA.
Jonathan RangelDepartment of Biology and Biochemistry, University of Houston, Houston, TX, USA.
Abiodun P BodurinDepartment of Biology and Biochemistry, University of Houston, Houston, TX, USA.
Tannon YuDepartment of Mathematics, University of Houston, Houston, TX, USA.
Brandon MistrettaDepartment of Biology and Biochemistry, University of Houston, Houston, TX, USA.
Sujina MaliDepartment of Biology and Biochemistry, University of Houston, Houston, TX, USA.
Preethi GunaratneDepartment of Biology and Biochemistry, University of Houston, Houston, TX, USA.
Steven J BarkDepartment of Biology and Biochemistry, University of Houston, Houston, TX, USA.
Jerry O EbalunodeHewlett Packard Enterprise Data Science Institute, University of Houston, Houston, TX, USA.
Arshad KhanDepartment of Pathology & Genomic Medicine, Center for Infectious Disease Houston Methodist Research Institute, Houston, TX, USA.
William R WidgerDepartment of Biology and Biochemistry, University of Houston, Houston, TX, USA.
Mehmet SenDepartment of Biology and Biochemistry, University of Houston, Houston, TX, USA.ORCID 0000-0002-9882-5590
University of Houston · USHewlett Packard Enterprise (United States) · USHouston Methodist · US

Funding

The atomic basis of leukocyte adhesion receptor (CD11c/CD18) activation and antagonism in solutionR03AI139651 · NIAID · UNIVERSITY OF HOUSTON · PI SEN, MEHMET · 2018 to 2019
$153k
NIAID NIH HHS R03 AI139651
6 · The paper itself

Abstract

Membrane proteins represent major drug targets, and the ability to determine their functions, structures, and conformational changes will significantly advance mechanistic approaches to both biotechnology and bioremediation, as well as the fight against pathogenic bacteria. A pertinent example is Mycobacterium tuberculosis (H37Rv), which contains ~4000 protein-coding genes, with almost a thousand having been categorized as 'membrane protein', and a few of which (~1%) have been functionally characterized and structurally modeled. However, the functions and structures of most membrane proteins that are sparsely, or only transiently, expressed, but essential in small phenotypic subpopulations or under stress conditions such as persistence or dormancy, remain unknown. Our deep quantitative proteomics profiles revealed that the hypothetical membrane protein 730 (Hyp730) WP_010079730 (protein ID Mlut_RS11895) from M. luteus is upregulated in dormancy despite a ~5-fold reduction in overall protein diversity. Its H37Rv paralog, Rv1234, showed a similar proteomic signature, but the function of Hyp730-like proteins has never been characterized. Here, we present an extensive proteomic and transcriptomic analysis of Hyp730 and have also characterized its in vitro recombinant expression, purification, refolding, and essentiality as well as its tertiary fold. Our biophysical studies, circular dichroism, and tryptophan fluorescence are in immediate agreement with in-depth in silico 3D-structure prediction, suggesting that Hyp730 is a double-pass membrane-spanning protein. Ablation of Hyp730-expression did not alter M. luteus growth, indicating that Hyp730 is not essential. Structural homology comparisons showed that Hyp730 is highly conserved and non-redundant in G+C rich Actinobacteria and might be involved, under stress conditions, in an energy-saving role in respiration during dormancy.

Indexed as

Amino Acid SequenceBacterial ProteinsGene Expression ProfilingGene Expression Regulation, BacterialGenome, BacterialLatent InfectionMembrane ProteinsMycobacterium tuberculosisPorinsProteomicsRNA, MessengerTandem Mass SpectrometryBacterial ProteinsMembrane ProteinsOmpF proteinPorinsRNA, MessengerbacteriadormancyMicrococcus luteustransmembrane-spanning helices

Identifiers

PMID33650800
PMCPMC7856521
OpenAlexW3128843405

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.