Evidence map›Paper›PMID 33649491›Full record

ArticleScientific reports2021

An African tick flavivirus forming an independent clade exhibits unique exoribonuclease-resistant RNA structures in the genomic 3'-untranslated region.

Hayato Harima, Yasuko Orba, Shiho Torii, Yongjin Qiu, Masahiro Kajihara, Yoshiki Eto, Naoya Matsuta, Bernard M Hang'ombe, Yuki Eshita, Kentaro Uemura and 10 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Xinyang flavivirus, fromThe Journal of general virology · 2024
    Article
  4. Aquatic Flaviviruses.Journal of virology · 2022
    Review
  5. Review
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 5 countries.

Hayato HarimaHokudai Center for Zoonosis Control in Zambia, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Yasuko OrbaDivision of Molecular Pathobiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Shiho ToriiDivision of Molecular Pathobiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Yongjin QiuHokudai Center for Zoonosis Control in Zambia, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Masahiro KajiharaDivision of Global Epidemiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Yoshiki EtoDivision of Global Epidemiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Naoya MatsutaDepartment of Electrical and Information Engineering, Graduate School of Science and Technology, Niigata University, Niigata, Japan.
Bernard M Hang'ombeDepartment of Para-Clinical Studies, School of Veterinary Medicine, The University of Zambia, Lusaka, Zambia.
Yuki EshitaHokudai Center for Zoonosis Control in Zambia, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Kentaro UemuraDivision of Molecular Pathobiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Keita MatsunoInternational Collaboration Unit, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Michihito SasakiDivision of Molecular Pathobiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Kentaro YoshiiLaboratory of Public Health, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, Japan.
Ryo NakaoLaboratory of Parasitology, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, Japan.
William W HallInternational Collaboration Unit, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Ayato TakadaInternational Collaboration Unit, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Takashi AbeDepartment of Electrical and Information Engineering, Graduate School of Science and Technology, Niigata University, Niigata, Japan.
Michael T WolfingerDepartment of Theoretical Chemistry, University of Vienna, Vienna, Austria.
Martin SimuunzaAfrica Center of Excellence for Infectious Diseases of Humans and Animals, The University of Zambia, Lusaka, Zambia.
Hirofumi SawaDivision of Molecular Pathobiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan. h-sawa@czc.hokudai.ac.jp.
Hokkaido University · JPUniversity of Zambia · ZMNiigata University · JPGlobal Virus Network · USHokkaido Institute of Public Health · JPShionogi (Japan) · JPUniversity of Vienna · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tick-borne flaviviruses (TBFVs) infect mammalian hosts through tick bites and can cause various serious illnesses, such as encephalitis and hemorrhagic fevers, both in humans and animals. Despite their importance to public health, there is limited epidemiological information on TBFV infection in Africa. Herein, we report that a novel flavivirus, Mpulungu flavivirus (MPFV), was discovered in a Rhipicephalus muhsamae tick in Zambia. MPFV was found to be genetically related to Ngoye virus detected in ticks in Senegal, and these viruses formed a unique lineage in the genus Flavivirus. Analyses of dinucleotide contents of flaviviruses indicated that MPFV was similar to those of other TBFVs with a typical vertebrate genome signature, suggesting that MPFV may infect vertebrate hosts. Bioinformatic analyses of the secondary structures in the 3'-untranslated regions (UTRs) revealed that MPFV exhibited unique exoribonuclease-resistant RNA (xrRNA) structures. Utilizing biochemical approaches, we clarified that two xrRNA structures of MPFV in the 3'-UTR could prevent exoribonuclease activity. In summary, our findings provide new information regarding the geographical distribution of TBFV and xrRNA structures in the 3'-UTR of flaviviruses.

Indexed as

Encephalitis Viruses, Tick-BorneRNA, ViralAnimalsFlavivirus InfectionsHost SpecificityHumansNucleic Acid ConformationTicksZambiaRNA, Viral

Identifiers

PMID33649491
PMCPMC7921595
OpenAlexW3108087881

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.