ArticleHorticulture research2021
Reannotation of the cultivated strawberry genome and establishment of a strawberry genome database.
Article in Horticulture research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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Who cites it
37 citing papers in PubMed, 75 citations in OpenAlex.
- Uncovering the genetic basis of fruit volatiles inHorticulture research · 2026Article
- Water soaking in strawberry (Fragaria × ananassa) has a polygenic background and is strongly influenced by environmental factors.BMC plant biology · 2026Article
- FaRIF as a key regulator of strawberry fruit ripening: deciphering its targets and interaction networks.Horticulture research · 2026Article
- The Role of Potassium and KUP/KT/HAK Transporters in Regulating Strawberry (Plants (Basel, Switzerland) · 2025Article
- Chromosome-level genome assembly of cultivated strawberry 'Seolhyang' (Fragaria × ananassa).Scientific data · 2025Article
- Haplotype-resolved chromosome-level genome assembly of Fragaria × ananassa Duch. cv. 'Yuexin'.Scientific data · 2025Article
- Loss-of-function mutations in the fruit softening geneHorticulture research · 2025Article
- Use ofFrontiers in microbiology · 2025Article
- Molecular mechanisms underlying the early steps of floral initiation in seasonal flowering genotypes of cultivated strawberry.Frontiers in plant science · 2025Article
- Genome-wide association studies in a diverse strawberry collection unveil loci controlling agronomic and fruit quality traits.The plant genome · 2024Article
- Changes in soluble sugars and the expression of sugar transporter protein genes in strawberry crowns responding toPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Genome-Wide Characterization and Expression Profiling of the AP2/ERF Gene Family inInternational journal of molecular sciences · 2024Article
- Genomic signatures of strawberry domestication and diversification.The Plant cell · 2024Article
- Changes in Phytohormones and Transcriptomic Reprogramming in Strawberry Leaves under Different Light Qualities.International journal of molecular sciences · 2024Article
- Full-length single-molecule sequencing uncovers novel insight into the global landscape of the cold stress response in trifoliate orange (Frontiers in plant science · 2024Article
- Advances in genomics and genome editing for improving strawberry (Frontiers in genetics · 2024Review
- A Novel R2R3-MYB Transcription Factor FaMYB10-like Promotes Light-Induced Anthocyanin Accumulation in Cultivated Strawberry.International journal of molecular sciences · 2023Article
- Genome-Wide Identification and Comparative Transcriptome Methods RevealInternational journal of molecular sciences · 2023Article
- CRISPR/Cas9 editing of the polygalacturonaseHorticulture research · 2023Article
- Comparative Characterization of Fruit Volatiles and Volatile-Related Genes Expression of 'Benihoppe' Strawberry and Its Somaclonal Mutant.Plants (Basel, Switzerland) · 2023Article
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Authors and funding
5 authors at 3 institutions in 3 countries.
Funding
Abstract
Cultivated strawberry (Fragaria × ananassa) is an important fruit crop species whose fruits are enjoyed by many worldwide. An octoploid of hybrid origin, the complex genome of this species was recently sequenced, serving as a key reference genome for cultivated strawberry and related species of the Rosaceae family. The current annotation of the F. ananassa genome mainly relies on ab initio predictions and, to a lesser extent, transcriptome data. Here, we present the structure and functional reannotation of the F. ananassa genome based on one PacBio full-length RNA library and ninety-two Illumina RNA-Seq libraries. This improved annotation of the F. ananassa genome, v1.0.a2, comprises a total of 108,447 gene models, with 97.85% complete BUSCOs. The models of 19,174 genes were modified, 360 new genes were identified, and 11,044 genes were found to have alternatively spliced isoforms. Additionally, we constructed a strawberry genome database (SGD) for strawberry gene homolog searching and annotation downloading. Finally, the transcriptome of the receptacles and achenes of F. ananassa at four developmental stages were reanalyzed and qualified, and the expression profiles of all the genes in this annotation are also provided. Together, this study provides an updated annotation of the F. ananassa genome, which will facilitate genomic analyses across the Rosaceae family and gene functional studies in cultivated strawberry.
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Registered trials
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