Evidence map›Paper›PMID 33641256›Full record

ArticleMolecular plant pathology2021

Analysis of the transcriptomic, metabolomic, and gene regulatory responses to Puccinia sorghi in maize.

Saet-Byul Kim, Lisa Van den Broeck, Shailesh Karre, Hoseong Choi, Shawn A Christensen, Guan-Feng Wang, Yeonhwa Jo, Won Kyong Cho, Peter Balint-Kurti

Open access · goldAbstract read
In one paragraph

Article in Molecular plant pathology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 34 citations in OpenAlex.

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  16. Frontiers in plant science · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Saet-Byul KimDepartment of Entomology and Plant Pathology, NC State University, Raleigh, North Carolina, USA.ORCID 0000-0001-8826-6265
Lisa Van den BroeckDepartment of Plant and Microbial Biology, NC State University, Raleigh, North Carolina, USA.ORCID 0000-0003-0226-0757
Shailesh KarreDepartment of Entomology and Plant Pathology, NC State University, Raleigh, North Carolina, USA.
Hoseong ChoiResearch Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.
Shawn A ChristensenChemistry Research Unit, Department of Agriculture-Agricultural Research Service (USDA-ARS), Center for Medical, Agricultural, and Veterinary Entomology, Gainesville, Florida, USA.
Guan-Feng WangDepartment of Entomology and Plant Pathology, NC State University, Raleigh, North Carolina, USA.ORCID 0000-0003-1010-2038
Yeonhwa JoResearch Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.
Won Kyong ChoResearch Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.ORCID 0000-0002-8416-5173
Peter Balint-KurtiDepartment of Entomology and Plant Pathology, NC State University, Raleigh, North Carolina, USA.ORCID 0000-0002-3916-194X
North Carolina State University · USSeoul National University · KRAgricultural Research Service · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Common rust, caused by Puccinia sorghi, is a widespread and destructive disease of maize. The Rp1-D gene confers resistance to the P. sorghi IN2 isolate, mediating a hypersensitive cell death response (HR). To identify differentially expressed genes (DEGs) and metabolites associated with the compatible (susceptible) interaction and with Rp1-D-mediated resistance in maize, we performed transcriptomics and targeted metabolome analyses of P. sorghi IN2-infected leaves from the near-isogenic lines H95 and H95:Rp1-D, which differed for the presence of Rp1-D. We observed up-regulation of genes involved in the defence response and secondary metabolism, including the phenylpropanoid, flavonoid, and terpenoid pathways. Metabolome analyses confirmed that intermediates from several transcriptionally up-regulated pathways accumulated during the defence response. We identified a common response in H95:Rp1-D and H95 with an additional H95:Rp1-D-specific resistance response observed at early time points at both transcriptional and metabolic levels. To better understand the mechanisms underlying Rp1-D-mediated resistance, we inferred gene regulatory networks occurring in response to P. sorghi infection. A number of transcription factors including WRKY53, BHLH124, NKD1, BZIP84, and MYB100 were identified as potentially important signalling hubs in the resistance-specific response. Overall, this study provides a novel and multifaceted understanding of the maize susceptible and resistance-specific responses to P. sorghi.

Indexed as

Host-Pathogen InteractionsMetabolomeTranscriptomeGene Expression ProfilingMetabolomicsPlant DiseasesPlant ProteinsPucciniaZea maysPlant Proteinscommon rustgene regulatory networkmaizePuccinia sorghiRNA-Seq

Identifiers

PMID33641256
PMCPMC7938627
OpenAlexW3135856506

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.