Evidence map›Paper›PMID 33640901›Full record

ArticleJournal of human genetics2021

Biallelic CDK9 variants as a cause of a new multiple-malformation syndrome with retinal dystrophy mimicking the CHARGE syndrome.

Sachiko Nishina, Katsuhiro Hosono, Shizuka Ishitani, Kenjiro Kosaki, Tadashi Yokoi, Tomoyo Yoshida, Kaoru Tomita, Maki Fukami, Hirotomo Saitsu, Tsutomu Ogata and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of human genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Sachiko Nishina *Department of Ophthalmology and Laboratory for Visual Science, National Center for Child Health and Development, Tokyo, Japan. nishina-s@ncchd.go.jp.
Katsuhiro Hosono *Department of Ophthalmology, Hamamatsu University School of Medicine, Shizuoka, Japan.ORCID http://orcid.org/0000-0002-7480-6133
Shizuka Ishitani *Department of Homeostatic Regulation, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Kenjiro KosakiCenter for Medical Genetics, Keio University School of Medicine, Tokyo, Japan.
Tadashi YokoiDepartment of Ophthalmology and Laboratory for Visual Science, National Center for Child Health and Development, Tokyo, Japan.
Tomoyo YoshidaDepartment of Ophthalmology and Laboratory for Visual Science, National Center for Child Health and Development, Tokyo, Japan.
Kaoru TomitaHeiwa Eye Clinic, Tokyo, Japan.
Maki FukamiDepartment of Molecular Endocrinology, National Research Institute for Child Health and Development, Tokyo, Japan.ORCID http://orcid.org/0000-0001-9971-4035
Hirotomo SaitsuDepartment of Biochemistry, Hamamatsu University School of Medicine, Shizuoka, Japan.ORCID http://orcid.org/0000-0003-0723-0960
Tsutomu OgataDepartment of Pediatrics, Hamamatsu University School of Medicine, Shizuoka, Japan.ORCID http://orcid.org/0000-0001-7178-9991
Tohru IshitaniDepartment of Homeostatic Regulation, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Yoshihiro HottaDepartment of Ophthalmology, Hamamatsu University School of Medicine, Shizuoka, Japan.ORCID http://orcid.org/0000-0003-4052-5066
Noriyuki AzumaDepartment of Ophthalmology and Laboratory for Visual Science, National Center for Child Health and Development, Tokyo, Japan.
National Center For Child Health and Development · JPHamamatsu University School of Medicine · JPThe University of Osaka · JPHeiwa (Japan) · JPKeio University · JP

Funding

Japan Agency for Medical Research and Development (AMED) JP18ek0109301MEXT | Japan Society for the Promotion of Science (JSPS) JP16K11284MEXT | Japan Society for the Promotion of Science (JSPS) JP20K09825Ministry of Health, Labour and Welfare (Ministry of Health, Labour and Welfare, Japan) 20FC1046Ministry of Health, Labour and Welfare (Ministry of Health, Labour and Welfare, Japan) 20FC1055Wellcome Trust FC001055
6 · The paper itself

Abstract

CDK9 has been considered a candidate gene involved in the CHARGE-like syndrome in a pair of cousins. We report an 8-year-old boy with a strikingly similar phenotype including facial asymmetry, microtia with preauricular tags and bilateral hearing loss, cleft lip and palate, cardiac dysrhythmia, and undescended testes. Joint contracture, no finger flexion creases, and large halluces were the same as those of a previously reported patient with homozygous CDK9 variants. The ocular phenotype included blepharophimosis, lacrimal duct obstruction, eyelid dermoids, Duane syndrome-like abduction deficit, and congenital cataracts. Optical coherence tomography and electroretinography evaluations revealed severe retinal dystrophy had developed at an early age. Trio-based whole-exome sequencing identified compound heterozygous variants in CDK9 [p.(A288T) of maternal origin and p.(R303C) of paternal origin] in the patient. Variants' kinase activities were reduced compared with wild type. We concluded that CDK9 biallelic variants cause a CHARGE-like malformation syndrome with retinal dystrophy as a distinguishing feature.

Indexed as

AllelesBlepharophimosisCHARGE SyndromeChildCleft LipCleft PalateCyclin-Dependent Kinase 9ElectroretinographyExome SequencingHomozygoteHumansLacrimal Duct ObstructionMaleMutationPedigreePhenotypeCDK9 protein, humanCyclin-Dependent Kinase 9

Identifiers

PMID33640901
PMCPMC8472910
OpenAlexW3134182147

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.