Evidence map›Paper›PMID 33640002›Full record

ArticleBiotechnology for biofuels2021

Colorimetric LPMO assay with direct implication for cellulolytic activity.

Søren Brander, Stine Lausten, Johan Ø Ipsen, Kristoffer B Falkenberg, Andreas B Bertelsen, Morten H H Nørholm, Lars H Østergaard, Katja S Johansen

Open access · goldAbstract read
In one paragraph

Article in Biotechnology for biofuels, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Søren BranderDepartment of Geosciences and Natural Resource Management, University of Copenhagen, 1958, Copenhagen, Denmark.
Stine LaustenDepartment of Plant and Environmental Sciences, University of Copenhagen, 1871, Copenhagen, Denmark.
Johan Ø IpsenDepartment of Plant and Environmental Sciences, University of Copenhagen, 1871, Copenhagen, Denmark.
Kristoffer B FalkenbergThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800, Kongens Lyngby, Denmark.
Andreas B BertelsenThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800, Kongens Lyngby, Denmark.
Morten H H NørholmThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800, Kongens Lyngby, Denmark.
Lars H ØstergaardNovozymes A/S, 2800, Kgs. Lyngby, Denmark.
Katja S JohansenDepartment of Geosciences and Natural Resource Management, University of Copenhagen, 1958, Copenhagen, Denmark. ksj@ign.ku.dk.ORCID http://orcid.org/0000-0002-7587-5990
University of Copenhagen · DKNovo Nordisk Foundation · DKNovozymes (Denmark) · DK

Funding

Novo Nordisk Fonden (DK) NNF17SA0027704
6 · The paper itself

Abstract

backgroundLytic polysaccharide monooxygenases (LPMOs) are important industrial enzymes known for their catalytic degradation of recalcitrant polymers such as cellulose or chitin. Their activity can be measured by lengthy HPLC methods, while high-throughput methods are less specific. A fast and specific LPMO assay would simplify screening for new or engineered LPMOs and accelerate biochemical characterization.

resultsA novel LPMO activity assay was developed based on the production of the dye phenolphthalein (PHP) from its reduced counterpart (rPHP). The colour response of rPHP oxidisation catalysed by the cellulose-specific LPMO from Thermoascus aurantiacus (TaAA9A), was found to increase tenfold by adding dehydroascorbate (DHA) as a co-substrate. The assay using a combination of rPHP and DHA was tested on 12 different metallo-enzymes, but only the LPMOs catalysed this reaction. The assay was optimized for characterization of TaAA9A and showed a sensitivity of 15 nM after 30 min incubation. It followed apparent Michaelis-Menten kinetics with k

conclusionsThis novel and specific LPMO assay can be carried out in a convenient microtiter plate format ready for high-throughput screening and enzyme characterization. DHA was the best co-substrate tested for oxidation of rPHP and this preference appears to be LPMO-specific. The identified co-substrates DHA and fructose are not normally considered as LPMO co-substrates but here they are shown to facilitate both oxidation of rPHP and degradation of cellulose. This is a rare example of a finding from a high-throughput assay that directly translate into enzyme activity on an insoluble substrate. The rPHP-based assay thus expands our understanding of LPMO catalysed reactions and has the potential to characterize LPMO activity in industrial settings, where usual co-substrates such as ascorbate and oxygen are depleted.

Indexed as

CelluloseDehydroascorbateEnzyme assayHigh throughputLytic polysaccharide monooxygenasePhenolphthalein

Identifiers

PMID33640002
PMCPMC7916272
OpenAlexW3134408834

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.