Evidence map›Paper›PMID 33639855›Full record

ArticleBMC genomics2021

Genome-wide miRNA analysis and integrated network for flavonoid biosynthesis in Osmanthus fragrans.

Yong Shi, Heng Xia, Xiaoting Cheng, Libin Zhang

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 26 citations in OpenAlex.

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  7. The characterization ofFrontiers in plant science · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yong ShiCollege of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074, China.
Heng XiaCollege of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074, China.
Xiaoting ChengCollege of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074, China.
Libin ZhangCollege of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074, China. libinzhang@hust.edu.cn.
Huazhong University of Science and Technology · CN

Funding

National key research and Development Program 2017YFD0101701National Natural Science Foundation of China 31540083
6 · The paper itself

Abstract

backgroundOsmanthus fragrans is an important economical plant containing multiple secondary metabolites including flavonoids and anthocyanins. During the past years, the roles of miRNAs in regulating the biosynthesis of secondary metabolites in plants have been widely investigated. However, few studies on miRNA expression profiles and the potential roles in regulating flavonoid biosynthesis have been reported in O. fragrans.

resultsIn this study, we used high-throughput sequencing technology to analyze the expression profiles of miRNAs in leaf and flower tissues of O. fragrans. As a result, 106 conserved miRNAs distributed in 47 families and 88 novel miRNAs were identified. Further analysis showed there were 133 miRNAs differentially expressed in leaves and flowers. Additionally, the potential target genes of miRNAs as well as the related metabolic pathways were predicted. In the end, flavonoid content was measured in flower and leaf tissues and potential role of miR858 in regulating flavonoid synthesis was illustrated in O. fragrans.

conclusionsThis study not only provided the genome-wide miRNA profiles in the flower and leaf tissue of O. fragrans, but also investigated the potential regulatory role of miR858a in flavonoid synthesis in O. fragrans. The results specifically indicated the connection of miRNAs to the regulation of secondary metabolite biosynthesis in non-model economical plant.

Indexed as

MicroRNAsOleaceaeFlowersGene Expression Regulation, PlantHigh-Throughput Nucleotide SequencingHumansPlant LeavesMicroRNAsDeep sequencingMicroRNAsOsmanthus fragransqRT-PCRTarget genes

Identifiers

PMID33639855
PMCPMC7913170
OpenAlexW3133644978

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.