Evidence map›Paper›PMID 33639671›Full record

ArticleAsian Pacific journal of cancer prevention : APJCP2021

A Systematic Approach of Data Collection and Analysis in Medical Imaging Research.

Manjunath K N, Chitra Manuel, Govardhan Hegde, Anjali Kulkarni, Rajendra Kurady, Manuel K

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Article in Asian Pacific journal of cancer prevention : APJCP, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Manjunath K NDepartment of Computer Science and Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, 576104, India.ORCID 0000-0001-8239-4047
Chitra ManuelDepartment of Information Science and Engineering, NIE Institute of Technology, Mysuru, 570008, India.ORCID 0000-0002-0763-6840
Govardhan HegdeDepartment of Computer Science and Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, 576104, India.ORCID 0000-0002-8741-8965
Anjali KulkarniConsultant, AI in Radiation Oncology, Bengaluru, India.
Rajendra KuradyRTWO Healthcare Solutions, J P Nagara, Bengaluru 560078, India, 560086.
Manuel KSoftware Consultant, Bengaluru, India 560100.ORCID 0000-0001-7397-6838

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundObtaining the right image dataset for the medical image research systematically is a tedious task. Anatomy segmentation is the key step before extracting the radiomic features from these images.

objectiveThe purpose of the study was to segment the 3D colon from CT images and to measure the smaller polyps using image processing techniques. This require huge number of samples for statistical analysis. Our objective was to systematically classify and arrange the dataset based on the parameters of interest so that the empirical testing becomes easier in medical image research. MATERIALS AND

methodsThis paper discusses a systematic approach of data collection and analysis before using it for empirical testing. In this research the image were considered from National Cancer Institute (NCI). TCIA from NCI has a vast collection of diagnostic quality images for the research community. These datasets were classified before empirical testing of the research objectives. The images in the TCIA collection were acquired as per the standard protocol defined by the American College of Radiology. Patients in the age group of 50-80 years were involved in various clinical trials (multicenter). The dataset collection has more than 10 billion of DICOM images of various anatomies. In this study, the number of samples considered for empirical testing was 300 (n) acquired from both supine and prone positions. The datasets were classified based on the parameters of interest. The classified dataset makes the dataset selection easier during empirical testing. The images were validated for the data completeness as per the DICOM standard of the 2020b version. A case study of CT Colonography dataset is discussed.

conclusionWith this systematic approach of data collection and classification, analysis will be become more easier during empirical testing.<br />.

Indexed as

AgedAged, 80 and overColonic PolypsColonography, Computed TomographicData ManagementDatasets as TopicFemaleHumansImage Processing, Computer-AssistedMaleMiddle Aged3D volumeCT colonographyOral contrastsecondary datasetthe volume of interest

Identifiers

PMID33639671
PMCPMC8190353

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.