Evidence map›Paper›PMID 33638993›Full record

ArticleNucleic acids research2021

A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates.

Dan Shen, Chengyi Song, Csaba Miskey, Shuheng Chan, Zhongxia Guan, Yatong Sang, Yali Wang, Cai Chen, Xiaoyan Wang, Ferenc Müller and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 27 citations in OpenAlex.

  1. Mining and engineering of activeSynthetic and systems biotechnology · 2027
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Dan ShenCollege of Animal Science & Technology, Yangzhou University, Yangzhou, Jiangsu 225009, China.
Chengyi SongCollege of Animal Science & Technology, Yangzhou University, Yangzhou, Jiangsu 225009, China.
Csaba MiskeyDivision of Medical Biotechnology, Paul Ehrlich Institute, Langen 63225, Germany.
Shuheng ChanCollege of Animal Science & Technology, Yangzhou University, Yangzhou, Jiangsu 225009, China.
Zhongxia GuanCollege of Animal Science & Technology, Yangzhou University, Yangzhou, Jiangsu 225009, China.
Yatong SangCollege of Animal Science & Technology, Yangzhou University, Yangzhou, Jiangsu 225009, China.
Yali WangCollege of Animal Science & Technology, Yangzhou University, Yangzhou, Jiangsu 225009, China.
Cai ChenCollege of Animal Science & Technology, Yangzhou University, Yangzhou, Jiangsu 225009, China.
Xiaoyan WangCollege of Animal Science & Technology, Yangzhou University, Yangzhou, Jiangsu 225009, China.
Ferenc MüllerInstitute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
Zoltán IvicsDivision of Medical Biotechnology, Paul Ehrlich Institute, Langen 63225, Germany.
Bo GaoCollege of Animal Science & Technology, Yangzhou University, Yangzhou, Jiangsu 225009, China.
Yangzhou University · CNPaul Ehrlich Institut · DEUniversity of Birmingham · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

New genetic tools and strategies are currently under development to facilitate functional genomics analyses. Here, we describe an active member of the Tc1/mariner transposon superfamily, named ZB, which invaded the zebrafish genome very recently. ZB exhibits high activity in vertebrate cells, in the range of those of the widely used transposons piggyBac (PB), Sleeping Beauty (SB) and Tol2. ZB has a similar structural organization and target site sequence preference to SB, but a different integration profile with respect to genome-wide preference among mammalian functional annotation features. Namely, ZB displays a preference for integration into transcriptional regulatory regions of genes. Accordingly, we demonstrate the utility of ZB for enhancer trapping in zebrafish embryos and in the mouse germline. These results indicate that ZB may be a powerful tool for genetic manipulation in vertebrate model species.

Indexed as

DNA Transposable ElementsAnimalsEnhancer Elements, GeneticHeLa CellsHep G2 CellsHumansMiceMutagenesisZebrafishDNA Transposable Elements

Identifiers

PMID33638993
PMCPMC7913693
OpenAlexW3127169012

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.