Evidence map›Paper›PMID 33638119›Full record

ArticleChromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology2021

Comprehensive mapping of transposable elements reveals distinct patterns of element accumulation on chromosomes of wild beetles.

Igor Costa Amorim, Cibele Gomes Sotero-Caio, Rafaelle Grazielle Coelho Costa, Crislaine Xavier, Rita de Cássia de Moura

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Article in Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Igor Costa Amorim *Laboratório de Biodiversidade e Genética de Insetos, Instituto de Ciências Biológicas, Universidade de Pernambuco, Rua Arnóbio Marques, 310 - Santo Amaro, Recife, PE, Brazil.
Cibele Gomes Sotero-Caio *Departamento de Genética, Universidade Federal de Pernambuco, Recife, PE, Brazil.
Rafaelle Grazielle Coelho CostaLaboratório de Biodiversidade e Genética de Insetos, Instituto de Ciências Biológicas, Universidade de Pernambuco, Rua Arnóbio Marques, 310 - Santo Amaro, Recife, PE, Brazil.
Crislaine XavierLaboratório de Biodiversidade e Genética de Insetos, Instituto de Ciências Biológicas, Universidade de Pernambuco, Rua Arnóbio Marques, 310 - Santo Amaro, Recife, PE, Brazil.
Rita de Cássia de MouraLaboratório de Biodiversidade e Genética de Insetos, Instituto de Ciências Biológicas, Universidade de Pernambuco, Rua Arnóbio Marques, 310 - Santo Amaro, Recife, PE, Brazil. rita.moura@upe.br.ORCID 0000-0002-4013-1844
Universidade de Pernambuco · BRUniversidade Federal de Pernambuco · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Over the past decades, transposable elements (TEs) have been shown to play important roles shaping genome architecture and as major promoters of genetic diversification and evolution of species. Likewise, TE accumulation is tightly linked to heterochromatinization and centromeric dynamics, which can ultimately contribute to speciation. Despite growing efforts to characterize the repeat landscape of species, few studies have focused on mapping the accumulation profiles of TEs on chromosomes. The few studies on repeat accumulation profiles in populations are biased towards model organisms and inbred lineages. Here, we present a cytomolecular analysis of six mobilome-extracted elements on multiple individuals from a population of a species of wild-captured beetle, Dichotomius schiffleri, aiming to investigate patterns of TE accumulation and uncover possible trends of their chromosomal distribution. Compiling TE distribution data from several individuals allowed us to make generalizations regarding variation of TEs at the gross chromosome level unlikely to have been achieved using a single individual, or even from a whole-genome assembly. We found that (1) transposable elements have differential accumulation profiles on D. schiffleri chromosomes and (2) specific chromosomes have their own TE accumulation landscape. The remarkable variability of their genomic distribution suggests that TEs are likely candidates to contribute to the evolution of heterochromatin architecture and promote high genetic variability in species that otherwise display conserved karyotypes. Therefore, this variation likely contributed to genome evolution and species diversification in Dichotomius.

Indexed as

ColeopteraDNA Transposable ElementsAnimalsEvolution, MolecularGenomicsHeterochromatinHumansDNA Transposable ElementsHeterochromatinChromosome mappingConstitutive heterochromatinDNA transposonsDung beetleRetrotransposons

Identifiers

PMID33638119
OpenAlexW3132289903

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.