ArticleCurrent microbiology2021
Complete Genome Sequence of Pedobacter sp. PAMC26386 and Their Low Temperature Application in Arabinose-containing Polysaccharides Degradation.
Article in Current microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed, 6 citations in OpenAlex.
- Functional Characterization of a Novel Flavonoid O-methyltransferase From Polar Pedobacter sp. PAMC26386 and Bioactivity Assessment of Flavonoids.Applied biochemistry and biotechnology · 2026Article
- Land use and Season Drive Compositional Shifts in Cyanobacteria-dominated Soil Bacterial Communities.Microbial ecology · 2026Article
- Cereal Arabinoxylans-Their Enzymatic Degradation and Relevance for Breadmaking and Human Health.Comprehensive reviews in food science and food safety · 2026Review
- Screening and community succession and functional prediction of high-efficiency degradation microbial communities for rice straw at low-temperature.Extremophiles : life under extreme conditions · 2025Article
- Characterizing the gut microbiome of birds-of-paradise in the northwest lowland of Papua Island.Open veterinary journal · 2024Article
- Compositional and functional diversities of core microbial communities in wild and artificial Ophiocordyceps sinensis.International microbiology : the official journal of the Spanish Society for Microbiology · 2023Article
- Microbial diversity of garden snail mucus.MicrobiologyOpen · 2022Article
- Screening and isolation of cold-adapted cellulose degrading bacterium: A candidate for straw degradation andFrontiers in microbiology · 2022Article
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
Abstract
Pedobacter are a representative genus of soil-associated bacteria. Here we have provided the complete genome sequence of Pedobacter sp. PAMC26386 isolated from Antarctic soil, and functionally annotated the genome, describing the unique features of carbohydrate active enzymes (CAZymes) and α-L-arabinofuranosidase (α-L-ABF). The genome of Pedobacter sp. PAMC26386 is circular and comprises 4,796,773 bp, with a 38.2% GC content. The genome encodes 4,175 genes, including 7 rRNA and 44 tRNA genes. We identified 172 genes (8 auxiliary activities, 8 carbohydrate binding modules, 23 carbohydrate esterases, 86 glycoside hydrolases, 42 glycosyl transferases, and 5 polysaccharide lyases) related to CAZymes using the dbCAN2 tool. We checked enzyme activity on 11 substrates using the AZCL assay and obtained strong activity for arabinooligosaccharide and hemicellulose. This includes information regarding α-L-ABF, which is active at low temperatures, based on the annotation results. Our findings on Pedobacter sp. PAMC26386 provide the basis for research in the future. The favorable properties of Pedobacter sp. PAMC26386 make it a good candidate for industrial applications involving low temperatures.
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