Evidence map›Paper›PMID 33637846›Full record

ArticleCommunications biology2021

Tuning flavin environment to detect and control light-induced conformational switching in Drosophila cryptochrome.

Siddarth Chandrasekaran, Connor M Schneps, Robert Dunleavy, Changfan Lin, Cristina C DeOliveira, Abir Ganguly, Brian R Crane

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. The Quantum Environment in Cryptochrome Enhances Light Absorption of FAD.bioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. A structural decryption of cryptochromes.Frontiers in chemistry · 2024
    Review
  14. Article
  15. Dimerization of European Robin Cryptochrome 4a.The journal of physical chemistry. B · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Room-temperature serial synchrotron crystallography of Drosophila cryptochrome.Acta crystallographica. Section D, Structural biology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Siddarth ChandrasekaranDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.ORCID 0000-0003-2990-7397
Connor M SchnepsDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
Robert DunleavyDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
Changfan LinDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
Cristina C DeOliveiraDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
Abir GangulyInstitute for Quantitative Biomedicine, Rutgers University, Piscataway, NJ, USA.ORCID 0000-0002-0630-1109
Brian R CraneDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA. bc69@cornell.edu.ORCID 0000-0001-8234-9991
Cornell University · USRutgers, The State University of New Jersey · US

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
TR&D 4 for ACERT, 2017-2021 funding periodP41GM103521 · NIGMS · CORNELL UNIVERSITY · PI FREED, JACK H · 2012 to 2021
$11.7M
TRAINING IN MOLECULAR PHYSICS OF BIOLOGICAL SYSTEMST32GM008267 · NIGMS · CORNELL UNIVERSITY ITHACA · PI WANG, MICHELLE D. · 1988 to 2021
$9.6M
Molecular Mechanisms of Signal Transduction Involving Light, Redox and Transmembrane ComplexesR35GM122535 · NIGMS · CORNELL UNIVERSITY · PI BRIAN R CRANE · 2017 to 2026
$7.1M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
X/Q Band Pulsed ENDOR SpectrometerS10OD021543 · OD · CORNELL UNIVERSITY · PI FREED, JACK H · 2016 to 2016
$1.4M
NCRR NIH HHS S10 RR029205NIGMS NIH HHS P30 GM124165NIGMS NIH HHS P41 GM103521NIGMS NIH HHS R35 GM122535NIGMS NIH HHS T32 GM008267NIH HHS S10 OD021543
6 · The paper itself

Abstract

Light-induction of an anionic semiquinone (SQ) flavin radical in Drosophila cryptochrome (dCRY) alters the dCRY conformation to promote binding and degradation of the circadian clock protein Timeless (TIM). Specific peptide ligation with sortase A attaches a nitroxide spin-probe to the dCRY C-terminal tail (CTT) while avoiding deleterious side reactions. Pulse dipolar electron-spin resonance spectroscopy from the CTT nitroxide to the SQ shows that flavin photoreduction shifts the CTT ~1 nm and increases its motion, without causing full displacement from the protein. dCRY engineered to form the neutral SQ serves as a dark-state proxy to reveal that the CTT remains docked when the flavin ring is reduced but uncharged. Substitutions of flavin-proximal His378 promote CTT undocking in the dark or diminish undocking in the light, consistent with molecular dynamics simulations and TIM degradation activity. The His378 variants inform on recognition motifs for dCRY cellular turnover and strategies for developing optogenetic tools.

Indexed as

AnimalsBenzoquinonesCryptochromesDrosophila melanogasterDrosophila ProteinsElectron Spin Resonance SpectroscopyEye ProteinsFlavinsLightMolecular Dynamics SimulationProtein BindingProtein ConformationProtein DenaturationStructure-Activity RelationshipBenzoquinonescry protein, DrosophilaCryptochromesDrosophila ProteinsEye ProteinsFlavinssemiquinone radicalstim protein, Drosophila

Identifiers

PMID33637846
PMCPMC7910608
OpenAlexW3130801442

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.