Evidence map›Paper›PMID 33637830›Full record

ArticleCommunications biology2021

An alternative food source for metabolism and longevity studies in Caenorhabditis elegans.

Safa Beydoun, Hyo Sub Choi, Gabrielle Dela-Cruz, Joseph Kruempel, Shijiao Huang, Daphne Bazopoulou, Hillary A Miller, Megan L Schaller, Charles R Evans, Scott F Leiser

Open access · goldAbstract readComparative Study
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
3.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 68 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Safa Beydoun *Molecular and Integrative Physiology Department, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0001-8068-3953
Hyo Sub Choi *Molecular and Integrative Physiology Department, University of Michigan, Ann Arbor, MI, USA.
Gabrielle Dela-CruzMolecular and Integrative Physiology Department, University of Michigan, Ann Arbor, MI, USA.
Joseph KruempelMolecular and Integrative Physiology Department, University of Michigan, Ann Arbor, MI, USA.
Shijiao HuangMolecular and Integrative Physiology Department, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0003-1867-4794
Daphne BazopoulouMolecular, Cellular, and Developmental Biology Department, University of Michigan, Ann Arbor, MI, USA.
Hillary A MillerCellular and Molecular Biology Program, University of Michigan, Ann Arbor, MI, USA.
Megan L SchallerMolecular and Integrative Physiology Department, University of Michigan, Ann Arbor, MI, USA.
Charles R EvansDepartment of Internal Medicine, University of Michigan, Ann Arbor, MI, USA.
Scott F LeiserMolecular and Integrative Physiology Department, University of Michigan, Ann Arbor, MI, USA. leiser@umich.edu.ORCID 0000-0002-8003-2955
University of Michigan · US

Funding

Research Training in BiogerontologyT32AG000114 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCOTT PLETCHER · 1985 to 2026
$12.4M
Mechanisms of the cell non-autonomous dietary restriction pathwayR01AG059583 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LEISER, SCOTT F · 2018 to 2022
$1.9M
Mechanisms of cell non-autonomous signaling through the hypoxic responseR01AG058717 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LEISER, SCOTT F · 2019 to 2023
$1.6M
Novel approaches to study emerging roles of xenobiotic enzymesR21AG059117 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LEISER, SCOTT F · 2018 to 2019
$429k
The mechanisms of serotonin-based signaling in food perception and DR-mediated longevityF31AG060663 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MILLER, HILLARY ANN · 2018 to 2020
$93k
NIA NIH HHS F31 AG060663NIA NIH HHS R01 AG058717NIA NIH HHS R01 AG059583NIA NIH HHS R21 AG059117NIA NIH HHS T32 AG000114
6 · The paper itself

Abstract

Caenorhabditis elegans is an instrumental research model used to advance our knowledge in areas including development, metabolism, and aging. However, research on metabolism and/or other measures of health/aging are confounded by the nematode's food source in the lab, live E. coli bacteria. Commonly used treatments, including ultraviolet irradiation and antibiotics, are successful in preventing bacterial replication, but the bacteria can remain metabolically active. The purpose of this study is to develop a metabolically inactive food source for the worms that will allow us to minimize the confounding effects of bacterial metabolism on worm metabolism and aging. Our strategy is to use a paraformaldehyde (PFA) treated E. coli food source and to determine its effects on worm health, metabolism and longevity. We initially determine the lowest possible concentrations of PFA necessary to rapidly and reproducibly kill bacteria. We then measure various aspects of worm behavior, healthspan and longevity, including growth rate, food attraction, brood size, lifespan and metabolic assessments, such as oxygen consumption and metabolomics. Our resulting data show that worms eat and grow well on these bacteria and support the use of 0.5% PFA-killed bacteria as a nematode food source for metabolic, drug, and longevity experiments.

Indexed as

Animal FeedEnergy MetabolismLongevityAnimalsCaenorhabditis elegansEscherichia coliFeeding BehaviorFertilityFormaldehydeMetabolomeMetabolomicsMicrobial ViabilityNutritive ValuePolymersTime FactorsFormaldehydeparaformPolymers

Identifiers

PMID33637830
PMCPMC7910432
OpenAlexW3133247890

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.