Evidence map›Paper›PMID 33637779›Full record

ArticleScientific reports2021

Identification of an N-acetylneuraminic acid-presenting bacteria isolated from a human microbiome.

Zhen Han, Peter S Thuy-Boun, Wayne Pfeiffer, Vincent F Vartabedian, Ali Torkamani, John R Teijaro, Dennis W Wolan

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  6. Chemical biology tools to probe bacterial glycans.Current opinion in chemical biology · 2024
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  7. mBio · 2024
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  9. bioRxiv : the preprint server for biology · 2024
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  11. Gut microbiota-associated metabolites and risk of ischemic stroke in REGARDS.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2023
    Article
  12. International journal of molecular sciences · 2023
    Article
  13. Article
  14. Oral administration of the commensal Alistipes onderdonkii prolongs allograft survival.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2023
    Article
  15. Review
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Zhen HanDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, 92037, USA.
Peter S Thuy-BounDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, 92037, USA.
Wayne PfeifferSan Diego Supercomputer Center, University of California, San Diego, La Jolla, CA, 92093, USA.
Vincent F VartabedianDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, 92037, USA.
Ali TorkamaniScripps Research Translational Institute, The Scripps Research Institute, La Jolla, CA, 92037, USA.
John R TeijaroDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, 92037, USA.
Dennis W WolanDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, 92037, USA. wolan@scripps.edu.
Scripps Research Institute · USSan Diego Supercomputer Center · US

Funding

Scripps Translational Science InstituteUL1TR002550 · NCATS · SCRIPPS RESEARCH INSTITUTE, THE · PI TOPOL, ERIC JEFFREY · 2018 to 2022
$28.9M
Identification of sialic acid-degrading microbiome proteins during colitisR21AI139744 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI WOLAN, DENNIS WILLIAM · 2018 to 2019
$532k
NCATS NIH HHS UL1 TR002550NIAID NIH HHS R21 AI139744
6 · The paper itself

Abstract

N-Acetylneuraminic acid is the most abundant sialic acid (SA) in humans and is expressed as the terminal sugar on intestinal mucus glycans. Several pathogenic bacteria harvest and display host SA on their own surfaces to evade Siglec-mediated host immunity. While previous studies have identified bacterial enzymes associated with SA catabolism, no reported methods permit the selective labeling, tracking, and quantitation of SA-presenting microbes within complex multi-microbial systems. We combined metabolic labeling, click chemistry, 16S rRNA gene, and whole-genome sequencing to track and identify SA-presenting microbes from a cultured human fecal microbiome. We isolated a new strain of Escherichia coli that incorporates SA onto its own surface and encodes for the nanT, neuA, and neuS genes necessary for harvesting and presenting SA. Our method is applicable to the identification of SA-presenting bacteria from human, animal, and environmental microbiomes, as well as providing an entry point for the investigation of surface-expressed SA-associated structures.

Indexed as

MicrobiotaBacteriaEscherichia coliFecesGenes, BacterialHumansN-Acetylneuraminic AcidN-Acetylneuraminic Acid

Identifiers

PMID33637779
PMCPMC7910532
OpenAlexW3133427773

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.