Evidence map›Paper›PMID 33637760›Full record

ArticleNature communications2021

A CSB-PAF1C axis restores processive transcription elongation after DNA damage repair.

Diana van den Heuvel, Cornelia G Spruijt, Román González-Prieto, Angela Kragten, Michelle T Paulsen, Di Zhou, Haoyu Wu, Katja Apelt, Yana van der Weegen, Kevin Yang and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 70 citations in OpenAlex.

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  12. Reply to van Schie et al.: ARK2N in TCR: Across in vivo and in vitro studies.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. Evidence that ARK2N is not a core factor in transcription-coupled DNA repair.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Diana van den HeuvelDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Cornelia G Spruijt *Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, Nijmegen, The Netherlands.
Román González-Prieto *Department of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands.ORCID 0000-0001-8997-2321
Angela KragtenDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Michelle T PaulsenDepartment of Radiation Oncology, University of Michigan, Ann Arbor, MI, USA.
Di ZhouDepartment of Molecular Genetics, Oncode Institute, Rotterdam, The Netherlands.
Haoyu WuDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Katja ApeltDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Yana van der WeegenDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.ORCID 0000-0002-6928-5150
Kevin YangDepartment of Radiation Oncology, University of Michigan, Ann Arbor, MI, USA.
Madelon DijkDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Lucia DaxingerDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Jurgen A MarteijnDepartment of Molecular Genetics, Oncode Institute, Rotterdam, The Netherlands.ORCID 0000-0001-9321-518X
Alfred C O VertegaalDepartment of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands.
Mats LjungmanDepartment of Radiation Oncology, University of Michigan, Ann Arbor, MI, USA.
Michiel VermeulenRadboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, Nijmegen, The Netherlands.ORCID 0000-0003-0836-6894
Martijn S LuijsterburgDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands. m.luijsterburg@lumc.nl.ORCID 0000-0001-5796-6541
Leiden University Medical Center · NLUniversity of Michigan · USOncode Institute · NLRadboud University Nijmegen · NL

Funding

Training Program in BioinformaticsT32GM070449 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ATHEY, BRIAN DAVID, BURMEISTER, MARGIT · 2005 to 2020
$3.6M
NIGMS NIH HHS T32 GM070449
6 · The paper itself

Abstract

Bulky DNA lesions in transcribed strands block RNA polymerase II (RNAPII) elongation and induce a genome-wide transcriptional arrest. The transcription-coupled repair (TCR) pathway efficiently removes transcription-blocking DNA lesions, but how transcription is restored in the genome following DNA repair remains unresolved. Here, we find that the TCR-specific CSB protein loads the PAF1 complex (PAF1C) onto RNAPII in promoter-proximal regions in response to DNA damage. Although dispensable for TCR-mediated repair, PAF1C is essential for transcription recovery after UV irradiation. We find that PAF1C promotes RNAPII pause release in promoter-proximal regions and subsequently acts as a processivity factor that stimulates transcription elongation throughout genes. Our findings expose the molecular basis for a non-canonical PAF1C-dependent pathway that restores transcription throughout the human genome after genotoxic stress.

Indexed as

Cell NucleusDNADNA DamageDNA HelicasesDNA RepairDNA Repair EnzymesHumansPoly-ADP-Ribose Binding ProteinsProtein Interaction MapsRNA Polymerase IITranscription FactorsTranscription, GeneticUltraviolet RaysDNADNA HelicasesDNA Repair EnzymesERCC6 protein, humanPAF1 protein, humanPoly-ADP-Ribose Binding ProteinsRNA Polymerase IITranscription Factors

Identifiers

PMID33637760
PMCPMC7910549
OpenAlexW3131547871

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.