Evidence map›Paper›PMID 33637755›Full record

ArticleNature communications2021

Retroviral integrations contribute to elevated host cancer rates during germline invasion.

Gayle K McEwen, David E Alquezar-Planas, Anisha Dayaram, Amber Gillett, Rachael Tarlinton, Nigel Mongan, Keith J Chappell, Joerg Henning, Milton Tan, Peter Timms and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

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  16. Reduction ofVaccine: X · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Expansion of a retrovirus lineage in the koala genome.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Gayle K McEwenDepartment of Wildlife Diseases, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany.ORCID http://orcid.org/0000-0001-5134-1380
David E Alquezar-PlanasDepartment of Wildlife Diseases, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany.
Anisha DayaramDepartment of Wildlife Diseases, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany.
Amber GillettAustralia Zoo Wildlife Hospital, Beerwah, QLD, Australia.
Rachael TarlintonFaculty of Medicine and Health Sciences, University of Nottingham, Leicestershire, UK.ORCID http://orcid.org/0000-0003-3325-2311
Nigel MonganFaculty of Medicine and Health Sciences, University of Nottingham, Leicestershire, UK.
Keith J ChappellSchool of Chemistry & Molecular Biosciences, University of Queensland, Brisbane, QLD, Australia.
Joerg HenningSchool of Veterinary Science, University of Queensland, Brisbane, QLD, Australia.
Milton TanIllinois Natural History Survey, University of Illinois at Urbana-Champaign, Champaign, IL, USA.ORCID http://orcid.org/0000-0002-9803-0827
Peter TimmsGenecology Research Center, University of the Sunshine Coast, Sippy Downs, QLD, Australia.ORCID http://orcid.org/0000-0002-1682-0025
Paul R YoungSchool of Chemistry & Molecular Biosciences, University of Queensland, Brisbane, QLD, Australia.
Alfred L RocaDepartment of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Alex D GreenwoodDepartment of Wildlife Diseases, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany. greenwood@izw-berlin.de.ORCID http://orcid.org/0000-0002-8249-1565

Funding

A singular opportunity to determine the evolutionary genetics of retroviral invasR01GM092706 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ROCA, ALFRED LUIS · 2011 to 2013
$849k
NIGMS NIH HHS R01 GM092706
6 · The paper itself

Abstract

Repeated retroviral infections of vertebrate germlines have made endogenous retroviruses ubiquitous features of mammalian genomes. However, millions of years of evolution obscure many of the immediate repercussions of retroviral endogenisation on host health. Here we examine retroviral endogenisation during its earliest stages in the koala (Phascolarctos cinereus), a species undergoing germline invasion by koala retrovirus (KoRV) and affected by high cancer prevalence. We characterise KoRV integration sites (IS) in tumour and healthy tissues from 10 koalas, detecting 1002 unique IS, with hotspots of integration occurring in the vicinity of known cancer genes. We find that tumours accumulate novel IS, with proximate genes over-represented for cancer associations. We detect dysregulation of genes containing IS and identify a highly-expressed transduced oncogene. Our data provide insights into the tremendous mutational load suffered by the host during active retroviral germline invasion, a process repeatedly experienced and overcome during the evolution of vertebrate lineages.

Indexed as

Germ CellsAnimalsbcl-X ProteinEndogenous RetrovirusesEvolution, MolecularGammaretrovirusGene Expression Regulation, NeoplasticGenome, HumanHumansNeoplasmsPhascolarctidaeRepressor ProteinsRetroviridaeRetroviridae Infectionsbcl-X ProteinRepressor Proteins

Identifiers

PMID33637755
PMCPMC7910482

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.