Evidence map›Paper›PMID 33637746›Full record

ArticleNPJ systems biology and applications2021

Cell polarisation in a bulk-surface model can be driven by both classic and non-classic Turing instability.

Johannes Borgqvist, Adam Malik, Carl Lundholm, Anders Logg, Philip Gerlee, Marija Cvijovic

Open access · goldAbstract read
In one paragraph

Article in NPJ systems biology and applications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Johannes BorgqvistDepartment of Mathematical Sciences, Chalmers University of Technology and the University of Gothenburg, Gothenburg, Sweden.
Adam MalikDepartment of Mathematical Sciences, Chalmers University of Technology and the University of Gothenburg, Gothenburg, Sweden.
Carl LundholmDepartment of Mathematical Sciences, Chalmers University of Technology and the University of Gothenburg, Gothenburg, Sweden.
Anders LoggDepartment of Mathematical Sciences, Chalmers University of Technology and the University of Gothenburg, Gothenburg, Sweden.ORCID 0000-0002-1547-4773
Philip GerleeDepartment of Mathematical Sciences, Chalmers University of Technology and the University of Gothenburg, Gothenburg, Sweden.
Marija CvijovicDepartment of Mathematical Sciences, Chalmers University of Technology and the University of Gothenburg, Gothenburg, Sweden. marija.cvijovic@chalmers.se.ORCID 0000-0002-5142-5100
Chalmers University of Technology · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The GTPase Cdc42 is the master regulator of eukaryotic cell polarisation. During this process, the active form of Cdc42 is accumulated at a particular site on the cell membrane called the pole. It is believed that the accumulation of the active Cdc42 resulting in a pole is driven by a combination of activation-inactivation reactions and diffusion. It has been proposed using mathematical modelling that this is the result of diffusion-driven instability, originally proposed by Alan Turing. In this study, we developed, analysed and validated a 3D bulk-surface model of the dynamics of Cdc42. We show that the model can undergo both classic and non-classic Turing instability by deriving necessary conditions for which this occurs and conclude that the non-classic case can be viewed as a limit case of the classic case of diffusion-driven instability. Using three-dimensional Spatio-temporal simulation we predicted pole size and time to polarisation, suggesting that cell polarisation is mainly driven by the reaction strength parameter and that the size of the pole is determined by the relative diffusion.

Indexed as

Biological Phenomenacdc42 GTP-Binding ProteinCell PolarityComputer SimulationDiffusionLinear ModelsModels, BiologicalModels, TheoreticalSpindle Polescdc42 GTP-Binding Protein

Identifiers

PMID33637746
PMCPMC7910310
OpenAlexW3130780973

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.