Evidence map›Paper›PMID 33637735›Full record

ArticleNature communications2021

The biosynthetic pathway of potato solanidanes diverged from that of spirosolanes due to evolution of a dioxygenase.

Ryota Akiyama, Bunta Watanabe, Masaru Nakayasu, Hyoung Jae Lee, Junpei Kato, Naoyuki Umemoto, Toshiya Muranaka, Kazuki Saito, Yukihiro Sugimoto, Masaharu Mizutani

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. A rare glycoalkaloid biosynthetic pathway from wild potato unlocks genetic routes to Colorado potato beetle resistance.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Multiomics Analysis across the Life Cycle Identifies ZnJournal of agricultural and food chemistry · 2026
    Article
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  11. Article
  12. Development of phytochemical genomics: From decoding metabolome to functional genomics and biotechnology of plant metabolism.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Ryota AkiyamaGraduate School of Agricultural Science, Kobe University, Hyogo, Japan.ORCID 0000-0003-2116-4226
Bunta WatanabeInstitute for Chemical Research, Kyoto University, Uji, Kyoto, Japan.ORCID 0000-0003-3645-5712
Masaru NakayasuGraduate School of Agricultural Science, Kobe University, Hyogo, Japan.
Hyoung Jae LeeGraduate School of Agricultural Science, Kobe University, Hyogo, Japan.
Junpei KatoGraduate School of Agricultural Science, Kobe University, Hyogo, Japan.
Naoyuki UmemotoRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, Japan.ORCID 0000-0001-5507-0848
Toshiya MuranakaDepartment of Biotechnology, Graduate School of Engineering, Osaka University, Osaka, Japan.ORCID 0000-0003-1058-2473
Kazuki SaitoRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, Japan.ORCID 0000-0001-6310-5342
Yukihiro SugimotoGraduate School of Agricultural Science, Kobe University, Hyogo, Japan.ORCID 0000-0002-8767-9671
Masaharu MizutaniGraduate School of Agricultural Science, Kobe University, Hyogo, Japan. mizutani@gold.kobe-u.ac.jp.ORCID 0000-0002-4321-0644
Kobe University · JPKyoto University · JPChiba University · JPRIKEN Center for Sustainable Resource Science · JPThe University of Osaka · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Potato (Solanum tuberosum), a worldwide major food crop, produces the toxic, bitter tasting solanidane glycoalkaloids α-solanine and α-chaconine. Controlling levels of glycoalkaloids is an important focus on potato breeding. Tomato (Solanum lycopersicum) contains a bitter spirosolane glycoalkaloid, α-tomatine. These glycoalkaloids are biosynthesized from cholesterol via a partly common pathway, although the mechanisms giving rise to the structural differences between solanidane and spirosolane remained elusive. Here we identify a 2-oxoglutarate dependent dioxygenase, designated as DPS (Dioxygenase for Potato Solanidane synthesis), that is a key enzyme for solanidane glycoalkaloid biosynthesis in potato. DPS catalyzes the ring-rearrangement from spirosolane to solanidane via C-16 hydroxylation. Evolutionary divergence of spirosolane-metabolizing dioxygenases contributes to the emergence of toxic solanidane glycoalkaloids in potato and the chemical diversity in Solanaceae.

Indexed as

Biosynthetic PathwaysAmino Acid SequenceCholesterolDioxygenasesGene Expression Regulation, PlantGenes, PlantHydroxylationKetoglutaric AcidsPhylogenyPlants, Genetically ModifiedSecondary MetabolismSolanineSolanum lycopersicumSolanum melongenaSolanum tuberosumTomatinealpha-chaconinealpha-solaninealpha-tomatineCholesterolDioxygenasesKetoglutaric AcidsSolanineTomatine

Identifiers

PMID33637735
PMCPMC7910490
OpenAlexW3129328297

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.