Evidence map›Paper›PMID 33637042›Full record

ArticleBMC bioinformatics2021

Accurate and fast mitotic detection using an anchor-free method based on full-scale connection with recurrent deep layer aggregation in 4D microscopy images.

Titinunt Kitrungrotsakul, Yutaro Iwamoto, Satoko Takemoto, Hideo Yokota, Sari Ipponjima, Tomomi Nemoto, Lanfen Lin, Ruofeng Tong, Jingsong Li, Yen-Wei Chen

Open access · goldAbstract read
In one paragraph

Article in BMC bioinformatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Titinunt KitrungrotsakulResearch Center for Healthcare Data Science, Zhejiang Lab, Hangzhou, China.
Yutaro IwamotoGraduate School of Information Science and Engineering, Ritsumeikan University, Kusatsu, Shiga, Japan.
Satoko TakemotoCenter for Advanced Photonics, RIKEN, Wako, Saitama, Japan.
Hideo YokotaCenter for Advanced Photonics, RIKEN, Wako, Saitama, Japan.
Sari IpponjimaResearch Institute for Electronic Science, Hokkaido University, Sapporo, Hokkaido, Japan.
Tomomi NemotoResearch Institute for Electronic Science, Hokkaido University, Sapporo, Hokkaido, Japan.
Lanfen LinCollege of Computer Science and Technology, Zhejiang University, Hangzhou, China.
Ruofeng TongResearch Center for Healthcare Data Science, Zhejiang Lab, Hangzhou, China.
Jingsong LiResearch Center for Healthcare Data Science, Zhejiang Lab, Hangzhou, China.
Yen-Wei ChenResearch Center for Healthcare Data Science, Zhejiang Lab, Hangzhou, China. chen@is.ritsumei.ac.jp.
Hokkaido University · JPRIKEN Center for Advanced Photonics · JPRitsumeikan University · JPZhejiang University of Science and Technology · CNZhejiang Lab · CNZhejiang University · CN

Funding

Ministry of Education, Culture, Sports, Science and Technology (JP) 20H05428Postdoctoral Research Foundation of China (CN) 2020M671826Zhejiang Lab Program 018DG0ZX01Zhejiang Lab Program 2020ND0AA01
6 · The paper itself

Abstract

backgroundTo effectively detect and investigate various cell-related diseases, it is essential to understand cell behaviour. The ability to detection mitotic cells is a fundamental step in diagnosing cell-related diseases. Convolutional neural networks (CNNs) have been successfully applied to object detection tasks, however, when applied to mitotic cell detection, most existing methods generate high false-positive rates due to the complex characteristics that differentiate normal cells from mitotic cells. Cell size and orientation variations in each stage make detecting mitotic cells difficult in 2D approaches. Therefore, effective extraction of the spatial and temporal features from mitotic data is an important and challenging task. The computational time required for detection is another major concern for mitotic detection in 4D microscopic images.

resultsIn this paper, we propose a backbone feature extraction network named full scale connected recurrent deep layer aggregation (RDLA++) for anchor-free mitotic detection. We utilize a 2.5D method that includes 3D spatial information extracted from several 2D images from neighbouring slices that form a multi-stream input.

conclusionsOur proposed technique addresses the scale variation problem and can efficiently extract spatial and temporal features from 4D microscopic images, resulting in improved detection accuracy and reduced computation time compared with those of other state-of-the-art methods.

Indexed as

MicroscopyNeural Networks, ComputerCell Physiological Phenomena4D imagecelldetectionmicroscopic imagemitotic

Identifiers

PMID33637042
PMCPMC7908657
OpenAlexW3131177324

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.