Evidence map›Paper›PMID 33635883›Full record

ArticlePloS one2021

Clinical benefit for clinical sequencing using cancer panel testing.

Sadaaki Nishimura, Atsushi Sugimoto, Shuhei Kushiyama, Shingo Togano, Kenji Kuroda, Yurie Yamamoto, Makoto Yamauchi, Toshiyuki Sumi, Hiroyasu Kaneda, Tomoya Kawaguchi and 10 more

Abstract readEvaluation Study
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Sadaaki NishimuraDepartment of Gastroenterological Surgery, Osaka City University Graduate School of Medicine, Osaka, Japan.
Atsushi SugimotoDepartment of Gastroenterological Surgery, Osaka City University Graduate School of Medicine, Osaka, Japan.
Shuhei KushiyamaDepartment of Gastroenterological Surgery, Osaka City University Graduate School of Medicine, Osaka, Japan.
Shingo ToganoDepartment of Gastroenterological Surgery, Osaka City University Graduate School of Medicine, Osaka, Japan.
Kenji KurodaDepartment of Gastroenterological Surgery, Osaka City University Graduate School of Medicine, Osaka, Japan.
Yurie YamamotoMolecular Oncology and Therapeutics, Osaka City University Graduate School of Medicine, Osaka, Japan.
Makoto YamauchiDepartment of Obstetrics and Gynecology, Osaka City University Graduate School of Medicine, Osaka, Japan.
Toshiyuki SumiDepartment of Obstetrics and Gynecology, Osaka City University Graduate School of Medicine, Osaka, Japan.
Hiroyasu KanedaDepartment of Clinical Oncology, Osaka City University Graduate School of Medicine, Osaka, Japan.
Tomoya KawaguchiDepartment of Respiratory Medicine, Osaka City University Graduate School of Medicine, Osaka, Japan.
Minoru KatoDepartment of Urology, Osaka City University Graduate School of Medicine, Osaka, Japan.
Mizuki TagamiDepartment of Ophthalmology and Visual Sciences, Osaka City University Graduate School of Medicine, Osaka, Japan.ORCID 0000-0002-8771-7252
Naoto OebisuDepartment of Orthopedic Surgery, Osaka City University Graduate School of Medicine, Osaka, Japan.
Manabu HoshiDepartment of Orthopedic Surgery, Osaka City University Graduate School of Medicine, Osaka, Japan.
Kenjiro KimuraDepartment of Gastroenterological Surgery, Osaka City University Graduate School of Medicine, Osaka, Japan.
Shoji KuboDepartment of Hepato-Biliary-Pancreatic Surgery, Osaka City University Graduate School of Medicine, Osaka, Japan.
Kazuya MugurumaDepartment of Gastroenterological Surgery, Osaka City University Graduate School of Medicine, Osaka, Japan.
Tsutomu TakashimaDepartment of Gastroenterological Surgery, Osaka City University Graduate School of Medicine, Osaka, Japan.
Masaichi OhiraDepartment of Gastroenterological Surgery, Osaka City University Graduate School of Medicine, Osaka, Japan.
Masakazu YashiroDepartment of Gastroenterological Surgery, Osaka City University Graduate School of Medicine, Osaka, Japan.ORCID 0000-0001-5743-7228

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundClinical sequencing using a panel of genes has recently been applied worldwide for patients with refractory solid tumors, but the significance of clinical sequencing using gene panel testing remains uncertain. Here we sought to clarify the feasibility and utility of clinical sequencing in the treatment of refractory tumors at our hospital.

methodsA total of 39 patients with advanced solid tumors treated at our hospital between 2018 and 2020 were enrolled in the clinical sequencing. Among them, we identified 36 patients whose tissue samples were of suitable quality for clinical sequencing, and we analyzed the genomic profiles of these tumors.

resultsPathogenic alterations were detected in 28 (78%) of the 36 patients. The most common mutation was TP53 (55%), followed by KRAS (22%), and the highest frequency of gene amplification was ERBB2 (17%). Nine of the 36 patients were identified as candidates for novel molecular-targeted therapy based on their actionable gene alterations, but only one case ended up receiving novel targeted therapy following the genetic tests.

conclusionsOur current results suggested that clinical sequencing might be useful for the detection of pathogenic alterations and the management of additional cancer treatment. However, molecular target based on actionable genomic alteration does not always bridge to subsequent therapy due to clinical deterioration, refusal for unapproved drug, and complexity of clinical trial access. Both improved optimal timing of clinical sequencing and a consensus about its off-label use might help patients receive greater benefit from clinical sequencing.

Indexed as

AgedBiomarkers, TumorErb-b2 Receptor Tyrosine KinasesFemaleGenetic TestingHumansMaleMiddle AgedNeoplasmsPredictive Value of TestsProto-Oncogene Proteins p21(ras)Sequence Analysis, DNATumor Suppressor Protein p53Biomarkers, TumorERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesKRAS protein, humanProto-Oncogene Proteins p21(ras)TP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID33635883
PMCPMC7909652

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.