Evidence map›Paper›PMID 33633695›Full record

ReviewFrontiers in microbiology2020

Translating New Synthetic Biology Advances for Biosensing Into the Earth and Environmental Sciences.

Ilenne Del Valle, Emily M Fulk, Prashant Kalvapalle, Jonathan J Silberg, Caroline A Masiello, Lauren B Stadler

Abstract readReview
In one paragraph

Review in Frontiers in microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

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  20. Synthetic microbiology in sustainability applications.Nature reviews. Microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ilenne Del ValleSystems, Synthetic, and Physical Biology Graduate Program, Rice University, Houston, TX, United States.
Emily M FulkSystems, Synthetic, and Physical Biology Graduate Program, Rice University, Houston, TX, United States.
Prashant KalvapalleSystems, Synthetic, and Physical Biology Graduate Program, Rice University, Houston, TX, United States.
Jonathan J SilbergDepartment of BioSciences, Rice University, Houston, TX, United States.
Caroline A MasielloDepartment of BioSciences, Rice University, Houston, TX, United States.
Lauren B StadlerDepartment of Civil and Environmental Engineering, Rice University, Houston, TX, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rapid diversification of synthetic biology tools holds promise in making some classically hard-to-solve environmental problems tractable. Here we review longstanding problems in the Earth and environmental sciences that could be addressed using engineered microbes as micron-scale sensors (biosensors). Biosensors can offer new perspectives on open questions, including understanding microbial behaviors in heterogeneous matrices like soils, sediments, and wastewater systems, tracking cryptic element cycling in the Earth system, and establishing the dynamics of microbe-microbe, microbe-plant, and microbe-material interactions. Before these new tools can reach their potential, however, a suite of biological parts and microbial chassis appropriate for environmental conditions must be developed by the synthetic biology community. This includes diversifying sensing modules to obtain information relevant to environmental questions, creating output signals that allow dynamic reporting from hard-to-image environmental materials, and tuning these sensors so that they reliably function long enough to be useful for environmental studies. Finally, ethical questions related to the use of synthetic biosensors in environmental applications are discussed.

Indexed as

biogeochemistrybiosensorcell-free sensorsenvironmental microbiologymarinesoilsynthetic biologywastewater

Identifiers

PMID33633695
PMCPMC7901896

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.