Evidence map›Paper›PMID 33632220›Full record

ArticleMalaria journal2021

Genetic characterization of Plasmodium vivax isolates from Pakistan using circumsporozoite protein (pvcsp) and merozoite surface protein-1 (pvmsp-1) genes as genetic markers.

Zainab Bibi, Anam Fatima, Rehana Rani, Ayesha Maqbool, Samea Khan, Shumaila Naz, Shahid Waseem

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Zainab BibiDepartment of Molecular Biology, Virtual University of Pakistan, Lahore, Pakistan.
Anam FatimaDepartment of Medicine, Polyclinic Hospital, Islamabad, Pakistan.
Rehana RaniDepartment of Life Sciences, Abasyn University, Islamabad, Pakistan.
Ayesha MaqboolDepartment of Molecular Biology, Virtual University of Pakistan, Lahore, Pakistan.
Samea KhanDepartment of Molecular Biology, Virtual University of Pakistan, Lahore, Pakistan.
Shumaila NazDepartment of Biological Sciences, National University of Medical Sciences, Rawalpindi, Pakistan. naz.pmasaaur@gmail.com.ORCID http://orcid.org/0000-0001-8088-0084
Shahid WaseemAlpha Genomics (Pvt) Ltd, Islamabad, Pakistan. swaseem92@yahoo.com.
Virtual University of Pakistan · PKAbasyn University · PKBenazir Bhutto Hospital · PKNational University of Medical Sciences · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPlasmodium vivax contributes to over 70% malaria burden in Pakistan, but limited data exists on various aspects including genetic diversity of the parasite as compared to other parts of the world. Since the information about the genetic diversity of P. vivax assists to understand the population dynamics of the parasite, the current study was designed to understand population divergence of P. vivax in Pakistan using circumsporozoite protein (pvcsp) and merozoite surface protein-1 (pvmsp-1) genes as molecular markers.

methodsThe PCR for pvcsp and pvmsp-1 genes was carried out for 150 P. vivax isolates, followed by DNA sequencing of 35 and 30, respectively. Genetic diversity and polymorphism were analysed using ChromasPro, ClustalW, MEGA7, DnaSP v.5 and WebLogo programs.

resultsThe PCR for pvcsp and pvmsp-1 genes was carried out for 150 P. vivax isolates and resulting the PCR products of 1100 bp for pvcsp and ~ 400 bp for pvmsp-1 genes, respectively. In the central-repeat region (CRR) of pvcsp gene, sequences comprised of four variable repeats of PRMs, out of which GDRADGQPA (PRM1), GDRAAGQPA (PRM2) were more extensively dispersed among the P. vivax isolates. Partial sequences (~ 400 bp) of block 2 of pvmsp-1 gene depicted high level of diversity.

conclusionThe results revealed the polymorphism and genetic diversity especially at the CRR of pvcsp and block 2 of pvmsp-1 genes, respectively. The base-line data presented here warrants future studies to investigate more into the genetic diversity of P. vivax with large sample size from across the country for better understanding of population dynamics of P. vivax that will help to control malaria at individual and community level.

Indexed as

Genetic MarkersMalaria, VivaxMerozoite Surface Protein 1PakistanPlasmodium vivaxProtozoan Proteinscircumsporozoite protein, ProtozoanGenetic MarkersMerozoite Surface Protein 1Protozoan ProteinsCSPGenetic diversityMalariaMSP-1Plasmodium vivax

Identifiers

PMID33632220
PMCPMC7908770
OpenAlexW3125247202

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.