Evidence map›Paper›PMID 33631195›Full record

ArticleThe Journal of biological chemistry

Type I and type V procollagen triple helix uses different subsets of the molecular ensemble for lysine posttranslational modifications in the rER.

Yoshihiro Ishikawa, Yuki Taga, Keith Zientek, Nobuyo Mizuno, Antti M Salo, Olesya Semenova, Sara F Tufa, Douglas R Keene, Paul Holden, Kazunori Mizuno and 3 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Review
  3. Evidence for the major role of PH4⍺EFB in the prolyl 4-hydroxylation of Drosophila collagen IV.Matrix biology : journal of the International Society for Matrix Biology · 2025
    Article
  4. Collagen IV biosynthesis: Intracellular choreography of post-translational modifications.Matrix biology : journal of the International Society for Matrix Biology · 2025
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Yoshihiro IshikawaDepartment of Biochemistry and Molecular Biology, Oregon Health & Science University, Portland, Oregon, USA; Research Department, Shriners Hospital for Children, Portland, Oregon, USA; Department of Ophthalmology, University of California San Francisco, School of Medicine, San Francisco, California, USA. Electronic address: yoshihiro.ishikawa@uscf.edu.
Yuki TagaNippi Research Institute of Biomatrix, Ibaraki, Japan.
Keith ZientekResearch Department, Shriners Hospital for Children, Portland, Oregon, USA.
Nobuyo MizunoResearch Department, Shriners Hospital for Children, Portland, Oregon, USA.
Antti M SaloOulu Center for Cell-Matrix Research, Biocenter Oulu and Faculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland.
Olesya SemenovaResearch Department, Shriners Hospital for Children, Portland, Oregon, USA.
Sara F TufaResearch Department, Shriners Hospital for Children, Portland, Oregon, USA.
Douglas R KeeneResearch Department, Shriners Hospital for Children, Portland, Oregon, USA.
Paul HoldenResearch Department, Shriners Hospital for Children, Portland, Oregon, USA.
Kazunori MizunoNippi Research Institute of Biomatrix, Ibaraki, Japan.
Douglas B GouldDepartment of Ophthalmology, University of California San Francisco, School of Medicine, San Francisco, California, USA; Department of Anatomy, University of California, San Francisco, School of Medicine, San Francisco, California USA.
Johanna MyllyharjuOulu Center for Cell-Matrix Research, Biocenter Oulu and Faculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland.
Hans Peter BächingerDepartment of Biochemistry and Molecular Biology, Oregon Health & Science University, Portland, Oregon, USA.
Shriners Hospitals for Children - Portland · USJapan Institute of Leather Research · JPOregon Health & Science University · USUniversity of Oulu · FIUniversity of California, San Francisco · US

Funding

Genetic and Mechanistic Study of Cerebral Small Vessel DiseaseR01NS096173 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOULD, DOUGLAS · 2017 to 2021
$3.5M
NINDS NIH HHS R01 NS096173
6 · The paper itself

Abstract

Collagen is the most abundant protein in humans. It has a characteristic triple-helix structure and is heavily posttranslationally modified. The complex biosynthesis of collagen involves processing by many enzymes and chaperones in the rough endoplasmic reticulum. Lysyl hydroxylase 1 (LH1) is required to hydroxylate lysine for cross-linking and carbohydrate attachment within collagen triple helical sequences. Additionally, a recent study of prolyl 3-hydroxylase 3 (P3H3) demonstrated that this enzyme may be critical for LH1 activity; however, the details surrounding its involvement remain unclear. If P3H3 is an LH1 chaperone that is critical for LH1 activity, P3H3 and LH1 null mice should display a similar deficiency in lysyl hydroxylation. To test this hypothesis, we compared the amount and location of hydroxylysine in the triple helical domains of type V and I collagen from P3H3 null, LH1 null, and wild-type mice. The amount of hydroxylysine in type V collagen was reduced in P3H3 null mice, but surprisingly type V collagen from LH1 null mice contained as much hydroxylysine as type V collagen from wild-type mice. In type I collagen, our results indicate that LH1 plays a global enzymatic role in lysyl hydroxylation. P3H3 is also involved in lysyl hydroxylation, particularly at cross-link formation sites, but is not required for all lysyl hydroxylation sites. In summary, our study suggests that LH1 and P3H3 likely have two distinct mechanisms to recognize different collagen types and to distinguish cross-link formation sites from other sites in type I collagen.

Indexed as

AnimalsCollagenCollagen Type ICollagen Type VEndoplasmic Reticulum, RoughHydroxylationHydroxylysineLysineMaleMiceMice, Inbred C57BLMice, KnockoutProcollagen-Lysine, 2-Oxoglutarate 5-DioxygenaseProcollagen-Proline DioxygenaseProtein ConformationProtein Processing, Post-TranslationalCollagenCollagen Type ICollagen Type VHydroxylysineLysineProcollagen-Lysine, 2-Oxoglutarate 5-DioxygenaseProcollagen-Proline Dioxygenaseproline, 2-oxoglutarate 3-dioxygenasecollagenendoplasmic reticulumlysyl hydroxylasemolecular chaperoneposttranslational modificationsprolyl hydroxylase

Identifiers

PMID33631195
PMCPMC7988497
OpenAlexW3133203186

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.