ArticleBioscience reports2021
Whole genome survey and microsatellite motif identification of Artemia franciscana.
Article in Bioscience reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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Who cites it
6 citing papers in PubMed, 11 citations in OpenAlex.
- High-quality chromosome-level genome assembly of femaleHeliyon · 2024Article
- Chromosome-Level Assembly of Artemia franciscana Sheds Light on Sex Chromosome Differentiation.Genome biology and evolution · 2024Article
- Comparison of microsatellite distribution in the genomes of Pteropus vampyrus and Miniopterus natalensis (Chiroptera).BMC genomic data · 2023Article
- Article
- Whole-Genome Survey Analyses Provide a New Perspective for the Evolutionary Biology of Shimofuri Goby,Animals : an open access journal from MDPI · 2022Article
- Sex-Biased Gene Expression and Isoform Profile of Brine ShrimpAnimals : an open access journal from MDPI · 2021Article
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Artemia is an industrially important genus used in aquaculture as a nutritious diet for fish and as an aquatic model organism for toxicity tests. However, despite the significance of Artemia, genomic research remains incomplete and knowledge on its genomic characteristics is insufficient. In particular, Artemia franciscana of North America has been widely used in fisheries of other continents, resulting in invasion of native species. Therefore, studies on population genetics and molecular marker development as well as morphological analyses are required to investigate its population structure and to discriminate closely related species. Here, we used the Illumina Hi-Seq platform to estimate the genomic characteristics of A. franciscana through genome survey sequencing (GSS). Further, simple sequence repeat (SSR) loci were identified for microsatellite marker development. The predicted genome size was ∼867 Mb using K-mer (a sequence of k characters in a string) analysis (K = 17), and heterozygosity and duplication rates were 0.655 and 0.809%, respectively. A total of 421467 SSRs were identified from the genome survey assembly, most of which were dinucleotide motifs with a frequency of 77.22%. The present study will be a useful basis in genomic and genetic research for A. franciscana.
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