Evidence map›Paper›PMID 33627785›Full record

ArticleOncogene2021

FOXF1 is required for the oncogenic properties of PAX3-FOXO1 in rhabdomyosarcoma.

David Milewski, Samriddhi Shukla, Berkley E Gryder, Arun Pradhan, Johnny Donovan, Parvathi Sudha, Sushmitha Vallabh, Athena Pyros, Yan Xu, Artem Barski and 7 more

Open access · greenAbstract read
In one paragraph

Article in Oncogene, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 28 citations in OpenAlex.

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  11. Ultra-high dose-rate proton FLASH improves tumor control.Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 2 countries.

David MilewskiDivision of Pulmonary Biology, The Perinatal Institute of Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0002-9778-8548
Samriddhi ShuklaDivision of Pulmonary Biology, The Perinatal Institute of Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Berkley E GryderGenetics Branch, National Cancer Institute, NIH, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0003-0130-2302
Arun PradhanDivision of Pulmonary Biology, The Perinatal Institute of Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Johnny DonovanDivision of Pulmonary Biology, The Perinatal Institute of Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0003-0614-9503
Parvathi SudhaDivision of Pulmonary Biology, The Perinatal Institute of Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Sushmitha VallabhDivision of Allergy and Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Athena PyrosDivision of Pulmonary Biology, The Perinatal Institute of Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Yan XuDivision of Pulmonary Biology, The Perinatal Institute of Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Artem BarskiDivision of Allergy and Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0002-1861-5316
Sara SzaboDepartment of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Brian TurpinDepartment of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Joseph G PresseyDepartment of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Douglas P MillayDepartment of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Javed KhanGenetics Branch, National Cancer Institute, NIH, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0002-5858-0488
Vladimir V KalinichenkoDivision of Pulmonary Biology, The Perinatal Institute of Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Tanya V KalinDivision of Pulmonary Biology, The Perinatal Institute of Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. tatiana.kalin@cchmc.org.ORCID http://orcid.org/0000-0002-8545-8277
Cincinnati Children's Hospital Medical Center · USNational Cancer Institute · US

Funding

Targeting FGFR4, RAS, and PAX3-FOXO1 gene in RhabdomyosarcomaZIABC010999 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KHAN, JAVED · 2009 to 2025
$14.0M
BIOINFORMATICS: SYSTEMS BIOLOGY OF PEDIATRIC CANCERSZIABC011002 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KHAN, JAVED · 2009 to 2025
$9.3M
Targeting High-risk Neuroblastoma using high through put siRNA screeningZIABC010806 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KHAN, JAVED · 2009 to 2025
$7.8M
Transcriptional Regulation of Endothelial Cells after Neonatal Lung InjuryR01HL141174 · NHLBI · UNIVERSITY OF ARIZONA · PI Vladimir Kalinichenko · 2018 to 2026
$4.7M
Predicting Response Prognosis in Pediatric CancersZIASC010366 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI KHAN, JAVED · 2009 to 2025
$4.7M
LungMap Phase II - Building a multidimensional map of developing human lungU01HL148856 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI WHITSETT, JEFFREY A, XU, YAN · 2019 to 2023
$4.5M
Development of novel therapeutic approaches for treatment of Alveolar Capillary DysplasiaR01HL152973 · NHLBI · UNIVERSITY OF ARIZONA · PI Vladimir Kalinichenko · 2021 to 2026
$3.6M
Molecular Mechanisms Regulated by FOXM1 in Chronic Lung RemodelingR01HL149631 · NHLBI · UNIVERSITY OF ARIZONA · PI KALINICHENKO, VLADIMIR · 2020 to 2022
$2.2M
Role of lung endothelial cells during fibrotic lung remodeling.R01HL158659 · NHLBI · UNIVERSITY OF ARIZONA · PI KALIN, TANYA · 2021 to 2024
$2.2M
Role of Foxm1 in Lung Cancer MicroenvironmentR01CA142724 · NCI · CINCINNATI CHILDRENS HOSP MED CTR · PI KALIN, TANYA · 2010 to 2014
$1.5M
Targeting Foxm1 in pulmonary fibrosisR01HL132849 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI KALIN, TANYA · 2016 to 2019
$1.5M
Transcriptional regulation of pulmonary fibrosisR56HL126660 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI KALIN, TANYA · 2015 to 2015
$390k
NCI NIH HHS R01 CA142724NHLBI NIH HHS R01 HL132849NHLBI NIH HHS R01 HL141174NHLBI NIH HHS R01 HL149631NHLBI NIH HHS R01 HL152973NHLBI NIH HHS R01 HL158659NHLBI NIH HHS R56 HL126660NHLBI NIH HHS U01 HL148856
6 · The paper itself

Abstract

The PAX3-FOXO1 fusion protein is the key oncogenic driver in fusion positive rhabdomyosarcoma (FP-RMS), an aggressive soft tissue malignancy with a particularly poor prognosis. Identifying key downstream targets of PAX3-FOXO1 will provide new therapeutic opportunities for treatment of FP-RMS. Herein, we demonstrate that Forkhead Box F1 (FOXF1) transcription factor is uniquely expressed in FP-RMS and is required for FP-RMS tumorigenesis. The PAX3-FOXO1 directly binds to FOXF1 enhancers and induces FOXF1 gene expression. CRISPR/Cas9 mediated inactivation of either FOXF1 coding sequence or FOXF1 enhancers suppresses FP-RMS tumorigenesis even in the presence of PAX3-FOXO1 oncogene. Knockdown or genetic knockout of FOXF1 induces myogenic differentiation in PAX3-FOXO1-positive FP-RMS. Over-expression of FOXF1 decreases myogenic differentiation in primary human myoblasts. In FP-RMS tumor cells, FOXF1 protein binds chromatin near enhancers associated with FP-RMS gene signature. FOXF1 cooperates with PAX3-FOXO1 and E-box transcription factors MYOD1 and MYOG to regulate FP-RMS-specific gene expression. Altogether, FOXF1 functions downstream of PAX3-FOXO1 to promote FP-RMS tumorigenesis.

Indexed as

CarcinogenesisCell Line, TumorForkhead Box Protein O1Forkhead Transcription FactorsGene Expression Regulation, NeoplasticHumansMuscle DevelopmentMyoD ProteinMyogeninPAX3 Transcription FactorRhabdomyosarcomaForkhead Box Protein O1Forkhead Transcription FactorsFOXF1 protein, humanFOXO1 protein, humanMyoD1 myogenic differentiation proteinMyoD ProteinMyogeninMYOG protein, humanPAX3 protein, humanPAX3 Transcription Factor

Identifiers

PMID33627785
PMCPMC8005492
OpenAlexW3132761859

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.