Evidence map›Paper›PMID 33627751›Full record

ArticleScientific reports2021

A novel approach for microRNA in situ hybridization using locked nucleic acid probes.

Isabella W Paulsen, Michael Bzorek, Jesper Olsen, Birgitte Grum-Schwensen, Jesper T Troelsen, Ole B Pedersen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. microRNAs as Biomarkers of Breast Cancer.International journal of molecular sciences · 2025
    Review
  4. Article
  5. miRNAs in pancreatic cancer progression and metastasis.Clinical & experimental metastasis · 2024
    Review
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Isabella W PaulsenDepartment of Clinical Immunology, Zealand University Hospital, Koege, Ringstedgade 77B, 4700, Naestved, Denmark. iwp@regionsjaelland.dk.
Michael BzorekDepartment of Pathology, Zealand University Hospital, Roskilde, Denmark.
Jesper OlsenDepartment of Science and Environment, Roskilde University, Roskilde, Denmark.
Birgitte Grum-SchwensenDepartment of Clinical Immunology, Zealand University Hospital, Koege, Ringstedgade 77B, 4700, Naestved, Denmark.
Jesper T TroelsenDepartment of Science and Environment, Roskilde University, Roskilde, Denmark.
Ole B PedersenDepartment of Clinical Immunology, Zealand University Hospital, Koege, Ringstedgade 77B, 4700, Naestved, Denmark. olbp@regionsjaelland.dk.
Roskilde University · DKZealand University Hospital · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identification of target tissue microRNAs (miR) using in situ hybridization (ISH), with digoxigenin-labeled locked nucleic acid (LNA) probes, is influenced by preanalytic parameters. To determine the best retrieval method for common microRNAs, a multiblock composed of paraffin-embedded tonsil, cervix, placenta, and hyperplastic prostate tissue were included. Tissue were fixed in 10% formalin in a range of 5-144 hours (h). Cut sections (5 μm) from the multiblock were subjected to combinations of pretreatment procedures: variable periods of proteinase K (PK) digestion or Heat-induced microRNA Retrieval (HmiRR) using target retrieval solution (TRS) pH 6.1 or 9, with or without enzymatic treatment (pepsin). Results for the overall categories: TRS pH 9 versus PK; p = 2.9e-23, TRS pH 9 versus TRS pH 6.1; p = 1.1e-14, TRS pH 6.1 versus PK; p = 2.9e-03. A long fixation time, resulted in the best microRNA preservation and staining intensity (long vs. short: p = 3.5e-47, long vs. moderate: p = 1.6e-44, moderate vs. short: p = 4.3e-16), was enhanced using HmiRR TRS pH 9 with or without pepsin providing high sensitivity and specificity. These observations conflict with other ISH techniques (e.g., messenger ribonucleic acid), which typically require shorter fixation periods, and therefore, further studies are warranted.

Indexed as

FemaleFormaldehydeHumansIn Situ HybridizationMaleMicroRNAsNucleic Acid ProbesOligonucleotidesParaffin EmbeddingSensitivity and SpecificityTissue FixationFormaldehydelocked nucleic acidMicroRNAsNucleic Acid ProbesOligonucleotides

Identifiers

PMID33627751
PMCPMC7904755
OpenAlexW3133122919

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.