Evidence map›Paper›PMID 33627386›Full record

ArticleJournal of virology2021

Mapping the Human Herpesvirus 6B transcriptome.

Annie Gravel, Wes Sanders, Éric Fournier, Arnaud Droit, Nathaniel Moorman, Louis Flamand

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Annie GravelDivision of Infectious Disease and Immunity, CHU de Québec Research Center, Quebec City, Québec, Canada.
Wes SandersDepartment of Microbiology and Immunology, UNC School of Medicine, Chapel Hill, North Carolina, USA.
Éric FournierDivision of Endocrinology and Nephrology, CHU de Québec Research Center, Quebec City, Québec, Canada.
Arnaud DroitDivision of Endocrinology and Nephrology, CHU de Québec Research Center, Quebec City, Québec, Canada.
Nathaniel MoormanDepartment of Microbiology and Immunology, UNC School of Medicine, Chapel Hill, North Carolina, USA.
Louis FlamandDivision of Infectious Disease and Immunity, CHU de Québec Research Center, Quebec City, Québec, Canada Louis.flamand@crchudequebec.ulaval.ca.ORCID https://orcid.org/0000-0001-5010-4586
Université Laval · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The "omics" revolution of recent years has simplified the study of RNA transcripts produced during viral infection and under specific defined conditions. In the quest to find new and differentially expressed transcripts during the course of human Herpesvirus 6B (HHV-6B) infection, we made use of large-scale RNA sequencing to analyze the HHV-6B transcriptome during productive infection of human Molt-3 T-cells. Analyses were performed at different time points following infection and specific inhibitors were used to classify the kinetic class of each open reading frame (ORF) reported in the annotated genome of HHV-6B Z29 strain. The initial search focussed on HHV-6B-specific reads matching new HHV-6B transcripts. Differential expression of new HHV-6B transcripts were observed in all samples analyzed. The presence of many of these new HHV-6B transcripts were confirmed by RT-PCR and Sanger sequencing. Many of these transcripts represented new splice variants of previously reported ORFs, including some transcripts that have yet to be defined. Overall, our work demonstrates the diversity and the complexity of the HHV-6B transcriptome.

Identifiers

PMID33627386
PMCPMC8139660
OpenAlexW3130891355

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.