Evidence map›Paper›PMID 33624267›Full record

ReviewJournal of microbiology (Seoul, Korea)2021

Ammonia-oxidizing archaea in biological interactions.

Jong-Geol Kim, Khaled S Gazi, Samuel Imisi Awala, Man-Young Jung, Sung-Keun Rhee

Abstract readReview
PubMed Publisher
In one paragraph

Review in Journal of microbiology (Seoul, Korea), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jong-Geol KimDepartment of Microbiology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Khaled S GaziDepartment of Microbiology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Samuel Imisi AwalaDepartment of Microbiology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Man-Young JungDivision of Biology Education, Department of Science Education, Jeju National University, Jeju, 63243, Republic of Korea. myjung@jejunu.ac.kr.
Sung-Keun RheeDepartment of Microbiology, Chungbuk National University, Cheongju, 28644, Republic of Korea. rhees@chungbuk.ac.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The third domain Archaea was known to thrive in extreme or anoxic environments based on cultivation studies. Recent metagenomics-based approaches revealed a widespread abundance of archaea, including ammonia-oxidizing archaea (AOA) of Thaumarchaeota in non-extreme and oxic environments. AOA alter nitrogen species availability by mediating the first step of chemolithoautotrophic nitrification, ammonia oxidation to nitrite, and are important primary producers in ecosystems, which affects the distribution and activity of other organisms in ecosystems. Thus, information on the interactions of AOA with other cohabiting organisms is a crucial element in understanding nitrogen and carbon cycles in ecosystems as well as the functioning of whole ecosystems. AOA are self-nourishing, and thus interactions of AOA with other organisms can often be indirect and broad. Besides, there are possibilities of specific and obligate interactions. Mechanisms of interaction are often not clearly identified but only inferred due to limited knowledge on the interaction factors analyzed by current technologies. Here, we overviewed different types of AOA interactions with other cohabiting organisms, which contribute to understanding AOA functions in ecosystems.

Indexed as

AmmoniaArchaeaEcosystemNitrificationOxidation-ReductionPhylogenyAmmoniaammonia-oxidizing archaeaecologyinteractionnitrificationnitrogen cycleThaumarchaeota

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.