Evidence map›Paper›PMID 33623709›Full record

ArticleVirus evolution2021

Virome composition in marine fish revealed by meta-transcriptomics.

Jemma L Geoghegan, Francesca Di Giallonardo, Michelle Wille, Ayda Susana Ortiz-Baez, Vincenzo A Costa, Timothy Ghaly, Jonathon C O Mifsud, Olivia M H Turnbull, David R Bellwood, Jane E Williamson and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Virus evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 97 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Jemma L GeogheganDepartment of Microbiology and Immunology, University of Otago, Dunedin 9016, New Zealand.ORCID 0000-0003-0970-0153
Francesca Di GiallonardoThe Kirby Institute, University of New South Wales, Sydney, NSW 2052, Australia.
Michelle WilleWHO Collaborating Centre for Reference and Research on Influenza, The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia.
Ayda Susana Ortiz-BaezMarie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences and School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.ORCID 0000-0003-0080-0633
Vincenzo A CostaDepartment of Biological Sciences, Macquarie University, Sydney, NSW 2109, Australia.
Timothy GhalyDepartment of Biological Sciences, Macquarie University, Sydney, NSW 2109, Australia.ORCID 0000-0002-5162-4054
Jonathon C O MifsudDepartment of Biological Sciences, Macquarie University, Sydney, NSW 2109, Australia.ORCID 0000-0001-8934-9193
Olivia M H TurnbullDepartment of Biological Sciences, Macquarie University, Sydney, NSW 2109, Australia.
David R BellwoodARC Centre of Excellence for Coral Reef Studies and College of Science and Engineering, James Cook University, Townsville, QLD 4811, Australia.
Jane E WilliamsonDepartment of Biological Sciences, Macquarie University, Sydney, NSW 2109, Australia.
Edward C HolmesMarie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences and School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.ORCID 0000-0001-9596-3552
Macquarie University · AUThe University of Sydney · AUARC Centre of Excellence for Coral Reef Studies · AUNew Zealand Institute for Public Health and Forensic Science · NZPeter Doherty Institute · AUUNSW Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Revealing the determinants of virome composition is central to placing disease emergence in a broader evolutionary context. Fish are the most species-rich group of vertebrates and so provide an ideal model system to study the factors that shape virome compositions and their evolution. We characterized the viromes of nineteen wild-caught species of marine fish using total RNA sequencing (meta-transcriptomics) combined with analyses of sequence and protein structural homology to identify divergent viruses that often evade characterization. From this, we identified twenty-five new vertebrate-associated viruses and a further twenty-two viruses likely associated with fish diet or their microbiomes. The vertebrate-associated viruses identified here included the first fish virus in the

Indexed as

fishhost-jumpingmetagenomicsviromevirus evolution

Identifiers

PMID33623709
PMCPMC7887440
OpenAlexW3129111142

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.