Evidence map›Paper›PMID 33623126›Full record

ArticleCommunications biology2021

Specific residues in the cytoplasmic domain modulate photocurrent kinetics of channelrhodopsin from Klebsormidium nitens.

Rintaro Tashiro, Kumari Sushmita, Shoko Hososhima, Sunita Sharma, Suneel Kateriya, Hideki Kandori, Satoshi P Tsunoda

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Blue-shifted ancyromonad channelrhodopsins for multiplex optogenetics.bioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
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  9. Article
  10. Potassium-selective channelrhodopsins.Biophysics and physicobiology · 2023
    Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Rintaro TashiroDepartment of Life Science and Applied Chemistry, Nagoya Institute of Technology, Nagoya, Japan.ORCID 0000-0003-4178-5089
Kumari SushmitaLaboratory of Optobiology, School of Biotechnology, Jawaharlal Nehru University, New Delhi, India.ORCID 0000-0001-9649-1446
Shoko HososhimaDepartment of Life Science and Applied Chemistry, Nagoya Institute of Technology, Nagoya, Japan.ORCID 0000-0001-7465-2907
Sunita SharmaLaboratory of Optobiology, School of Biotechnology, Jawaharlal Nehru University, New Delhi, India.ORCID 0000-0002-6531-7522
Suneel KateriyaLaboratory of Optobiology, School of Biotechnology, Jawaharlal Nehru University, New Delhi, India.ORCID 0000-0001-5428-4297
Hideki KandoriDepartment of Life Science and Applied Chemistry, Nagoya Institute of Technology, Nagoya, Japan.ORCID 0000-0002-4922-1344
Satoshi P TsunodaDepartment of Life Science and Applied Chemistry, Nagoya Institute of Technology, Nagoya, Japan. tsunoda.satoshi@nitech.ac.jp.ORCID 0000-0003-3636-1521
Nagoya Institute of Technology · JPJawaharlal Nehru University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Channelrhodopsins (ChRs) are light-gated ion channels extensively applied as optogenetics tools for manipulating neuronal activity. All currently known ChRs comprise a large cytoplasmic domain, whose function is elusive. Here, we report the cation channel properties of KnChR, one of the photoreceptors from a filamentous terrestrial alga Klebsormidium nitens, and demonstrate that the cytoplasmic domain of KnChR modulates the ion channel properties. KnChR is constituted of a 7-transmembrane domain forming a channel pore, followed by a C-terminus moiety encoding a peptidoglycan binding domain (FimV). Notably, the channel closure rate was affected by the C-terminus moiety. Truncation of the moiety to various lengths prolonged the channel open lifetime by more than 10-fold. Two Arginine residues (R287 and R291) are crucial for altering the photocurrent kinetics. We propose that electrostatic interaction between the rhodopsin domain and the C-terminus domain accelerates the channel kinetics. Additionally, maximal sensitivity was exhibited at 430 and 460 nm, the former making KnChR one of the most blue-shifted ChRs characterized thus far, serving as a novel prototype for studying the molecular mechanism of color tuning of the ChRs. Furthermore, KnChR would expand the optogenetics tool kit, especially for dual light applications when short-wavelength excitation is required.

Indexed as

Ion Channel GatingAmino Acid SequenceAnimalsCell LineChannelrhodopsinsChlorophytaKineticsLightMembrane PotentialsMiceOptogeneticsProtein DomainsRatsStructure-Activity RelationshipChannelrhodopsins

Identifiers

PMID33623126
PMCPMC7902849
OpenAlexW3133357201

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.