Evidence map›Paper›PMID 33623032›Full record

ArticleNature communications2021

A rotary mechanism for allostery in bacterial hybrid malic enzymes.

Christopher John Harding, Ian Thomas Cadby, Patrick Joseph Moynihan, Andrew Lee Lovering

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Christopher John HardingDepartment of Biosciences, University of Birmingham, Birmingham, UK. cjh30@st-andrews.ac.uk.ORCID http://orcid.org/0000-0003-0388-6460
Ian Thomas CadbyDepartment of Biosciences, University of Birmingham, Birmingham, UK.ORCID http://orcid.org/0000-0002-3135-6769
Patrick Joseph MoynihanDepartment of Biosciences, University of Birmingham, Birmingham, UK.ORCID http://orcid.org/0000-0003-4182-6223
Andrew Lee LoveringDepartment of Biosciences, University of Birmingham, Birmingham, UK. a.lovering@bham.ac.uk.ORCID http://orcid.org/0000-0002-1856-7975
University of Birmingham · GBUniversity of St Andrews · GB

Funding

Biotechnology and Biological Sciences Research Council 1500753Biotechnology and Biological Sciences Research Council BB/S010122/1
6 · The paper itself

Abstract

Bacterial hybrid malic enzymes (MaeB grouping, multidomain) catalyse the transformation of malate to pyruvate, and are a major contributor to cellular reducing power and carbon flux. Distinct from other malic enzyme subtypes, the hybrid enzymes are regulated by acetyl-CoA, a molecular indicator of the metabolic state of the cell. Here we solve the structure of a MaeB protein, which reveals hybrid enzymes use the appended phosphotransacetylase (PTA) domain to form a hexameric sensor that communicates acetyl-CoA occupancy to the malic enzyme active site, 60 Å away. We demonstrate that allostery is governed by a large-scale rearrangement that rotates the catalytic subunits 70° between the two states, identifying MaeB as a new model enzyme for the study of ligand-induced conformational change. Our work provides the mechanistic basis for metabolic control of hybrid malic enzymes, and identifies inhibition-insensitive variants that may find utility in synthetic biology.

Indexed as

Acetyl Coenzyme AAllosteric RegulationApoproteinsBdellovibrio bacteriovorusBinding SitesBiocatalysisKineticsMalate DehydrogenaseModels, MolecularMotionProtein DomainsAcetyl Coenzyme AApoproteinsMalate Dehydrogenasemalate dehydrogenase (decarboxylating)

Identifiers

PMID33623032
PMCPMC7902834
OpenAlexW3130220358

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.