Evidence map›Paper›PMID 33623024›Full record

ArticleNature communications2021

Systematic functional analysis of Leishmania protein kinases identifies regulators of differentiation or survival.

N Baker, C M C Catta-Preta, R Neish, J Sadlova, B Powell, E V C Alves-Ferreira, V Geoghegan, J B T Carnielli, K Newling, C Hughes and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
18.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 122 citations in OpenAlex.

  1. Review
  2. Article
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  7. Efficient and Stable Subcellular Protein Labeling inPathogens (Basel, Switzerland) · 2026
    Article
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  11. CRISPR-Cas9 precision editing of kinetochore protein phosphosite codons inFrontiers in cellular and infection microbiology · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 2 countries.

N Baker *York Biomedical Research Institute, University of York, York, UK.
C M C Catta-Preta *York Biomedical Research Institute, University of York, York, UK.ORCID http://orcid.org/0000-0001-8983-3487
R NeishYork Biomedical Research Institute, University of York, York, UK.ORCID http://orcid.org/0000-0001-9756-546X
J SadlovaDepartment of Parasitology, Faculty of Science, Charles University, Prague, Czech Republic.ORCID http://orcid.org/0000-0002-0432-2707
B PowellDepartment of Mathematics, University of York, York, UK.ORCID http://orcid.org/0000-0002-0247-7713
E V C Alves-FerreiraYork Biomedical Research Institute, University of York, York, UK.
V GeogheganYork Biomedical Research Institute, University of York, York, UK.
J B T CarnielliYork Biomedical Research Institute, University of York, York, UK.ORCID http://orcid.org/0000-0003-2116-6379
K NewlingDepartment of Biology, University of York, York, UK.ORCID http://orcid.org/0000-0003-0354-2924
C HughesYork Biomedical Research Institute, University of York, York, UK.
B VojtkovaDepartment of Parasitology, Faculty of Science, Charles University, Prague, Czech Republic.
J AnandYork Biomedical Research Institute, University of York, York, UK.
A MihutDepartment of Biology, University of York, York, UK.
P B WalradYork Biomedical Research Institute, University of York, York, UK.ORCID http://orcid.org/0000-0002-2302-0720
L G WilsonYork Biomedical Research Institute, University of York, York, UK.ORCID http://orcid.org/0000-0001-6659-6001
J W PitchfordDepartment of Biology, University of York, York, UK.
P VolfDepartment of Parasitology, Faculty of Science, Charles University, Prague, Czech Republic.ORCID http://orcid.org/0000-0003-1790-1123
J C MottramYork Biomedical Research Institute, University of York, York, UK. jeremy.mottram@york.ac.uk.ORCID http://orcid.org/0000-0001-5574-3766
University of York · GBCharles University · CZ

Funding

Medical Research Council MR/L00092X/1Medical Research Council MR/P027989/1Wellcome Trust 200807Wellcome Trust 200807/Z/16/Z
6 · The paper itself

Abstract

Differentiation between distinct stages is fundamental for the life cycle of intracellular protozoan parasites and for transmission between hosts, requiring stringent spatial and temporal regulation. Here, we apply kinome-wide gene deletion and gene tagging in Leishmania mexicana promastigotes to define protein kinases with life cycle transition roles. Whilst 162 are dispensable, 44 protein kinase genes are refractory to deletion in promastigotes and are likely core genes required for parasite replication. Phenotyping of pooled gene deletion mutants using bar-seq and projection pursuit clustering reveal functional phenotypic groups of protein kinases involved in differentiation from metacyclic promastigote to amastigote, growth and survival in macrophages and mice, colonisation of the sand fly and motility. This unbiased interrogation of protein kinase function in Leishmania allows targeted investigation of organelle-associated signalling pathways required for successful intracellular parasitism.

Indexed as

Cell DifferentiationAnimalsCell SurvivalCRISPR-Associated Protein 9CRISPR-Cas SystemsFemaleFlagellaGene DeletionLeishmania mexicanaLeishmaniasisMiceMice, Inbred BALB CModels, BiologicalMutationProtein KinasesProteomeCRISPR-Associated Protein 9Protein KinasesProteome

Identifiers

PMID33623024
PMCPMC7902614
OpenAlexW3130023812

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.