Evidence map›Paper›PMID 33621239›Full record

ArticlePLoS pathogens2021

Antibody affinity versus dengue morphology influences neutralization.

Guntur Fibriansah, Elisa X Y Lim, Jan K Marzinek, Thiam-Seng Ng, Joanne L Tan, Roland G Huber, Xin-Ni Lim, Valerie S Y Chew, Victor A Kostyuchenko, Jian Shi and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Trial
  2. Article
  3. Antiviral agents for dengue virus.Virologica Sinica · 2025
    Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Guntur FibriansahEmerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.ORCID 0000-0002-9990-3335
Elisa X Y LimEmerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.
Jan K MarzinekBioinformatics Institute, A*STAR (Agency for Science, Technology and Research), Singapore, Singapore.ORCID 0000-0002-5493-8753
Thiam-Seng NgEmerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.ORCID 0000-0002-1668-8976
Joanne L TanEmerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.
Roland G HuberBioinformatics Institute, A*STAR (Agency for Science, Technology and Research), Singapore, Singapore.ORCID 0000-0001-5093-5988
Xin-Ni LimEmerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.ORCID 0000-0001-8117-3613
Valerie S Y ChewEmerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.ORCID 0000-0001-8679-2659
Victor A KostyuchenkoEmerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.ORCID 0000-0001-9751-307X
Jian ShiCentre for BioImaging Sciences, National University of Singapore, Singapore, Singapore.ORCID 0000-0003-3810-5302
Ganesh S AnandDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.ORCID 0000-0001-8995-3067
Peter J BondBioinformatics Institute, A*STAR (Agency for Science, Technology and Research), Singapore, Singapore.ORCID 0000-0003-2900-098X
James E CroweThe Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.ORCID 0000-0002-0049-1079
Shee-Mei LokEmerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.ORCID 0000-0003-4631-8041
National University of Singapore · SGAgency for Science, Technology and Research · SGVanderbilt University Medical Center · US

Funding

Yessinia autotransporters (Yaps): Structure, function, and host responseU54AI057157 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SEMPOWSKI, GREGORY D · 2003 to 2013
$91.4M
NIAID NIH HHS U54 AI057157
6 · The paper itself

Abstract

Different strains within a dengue serotype (DENV1-4) can have smooth, or "bumpy" surface morphologies with different antigenic characteristics at average body temperature (37°C). We determined the neutralizing properties of a serotype cross-reactive human monoclonal antibody (HMAb) 1C19 for strains with differing morphologies within the DENV1 and DENV2 serotypes. We mapped the 1C19 epitope to E protein domain II by hydrogen deuterium exchange mass spectrometry, cryoEM and molecular dynamics simulations, revealing that this epitope is likely partially hidden on the virus surface. We showed the antibody has high affinity for binding to recombinant DENV1 E proteins compared to those of DENV2, consistent with its strong neutralizing activities for all DENV1 strains tested regardless of their morphologies. This finding suggests that the antibody could out-compete E-to-E interaction for binding to its epitope. In contrast, for DENV2, HMAb 1C19 can only neutralize when the epitope becomes exposed on the bumpy-surfaced particle. Although HMAb 1C19 is not a suitable therapeutic candidate, this study with HMAb 1C19 shows the importance of choosing a high-affinity antibody that could neutralize diverse dengue virus morphologies for therapeutic purposes.

Indexed as

Antibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralAntibody AffinityAntibody SpecificityDengueDengue VirusEpitopesHumansMolecular Dynamics SimulationProtein ConformationSerogroupViral Envelope ProteinsAntibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralEpitopesE protein TH Sman, Dengue virusViral Envelope Proteins

Identifiers

PMID33621239
PMCPMC7935256
OpenAlexW3129577794

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.