Evidence map›Paper›PMID 33620442›Full record

ArticleFEMS microbiology letters2021

Similar solutions to a common challenge: regulation of genes encoding Ralstonia solanacearum xanthine dehydrogenase.

Smitha Sivapragasam, Arpita Ghosh, Sanjay Kumar, Danté T Johnson, Anne Grove

Open access · greenAbstract read
In one paragraph

Article in FEMS microbiology letters, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Smitha SivapragasamDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.
Arpita GhoshDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.
Sanjay KumarDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.
Danté T JohnsonDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.
Anne GroveDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.
Louisiana State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The stringent response involves accumulation of (p)ppGpp, and it ensures that survival is prioritized. Production of (p)ppGpp requires purine synthesis, and upregulation of an operon that encodes the purine salvage enzyme xanthine dehydrogenase (Xdh) has been observed during stringent response in some bacterial species, where direct binding of ppGpp to a TetR-family transcription factor is responsible for increased xdh gene expression. We show here that the plant pathogen Ralstonia solanacearum has a regulatory system in which the LysR-family transcription factor XanR controls expression of the xan operon; this operon encodes Xdh as well as other enzymes involved in purine salvage, which favor accumulation of xanthine. XanR bound upstream of the xan operon, a binding that was attenuated on addition of either ppGpp or cyclic di-guanosine monophosphate (c-di-GMP). Using a reporter in which enhanced green fluorescent protein (EGFP) is expressed under control of a modified xan promoter, XanR was shown to repress EGFP production. Our data suggest that R. solanacearum features a regulatory mechanism in which expression of genes encoding purine salvage enzymes is controlled by a transcription factor that belongs to a different protein family, yet performs similar regulatory functions.

Indexed as

Gene Expression Regulation, BacterialBinding SitesGuanosine PentaphosphateLigandsModels, MolecularOperonPurinesRalstonia solanacearumRepressor ProteinsTranscription FactorsXanthineXanthine DehydrogenaseGuanosine PentaphosphateLigandsPurinesRepressor ProteinsTranscription FactorsXanthineXanthine Dehydrogenasegene regulationLTTR(p)ppGpppurine salvageRalstonia solanacearumxanthine dehydrogenase

Identifiers

PMID33620442
PMCPMC8324234
OpenAlexW3132168755

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.