Evidence map›Paper›PMID 33620121›Full record

ArticleProtein science : a publication of the Protein Society2021

The STI1-domain is a flexible alpha-helical fold with a hydrophobic groove.

Michelle Y Fry, Shyam M Saladi, William M Clemons

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  5. Review
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  8. Article
  9. The AAA+ protein Msp1 recognizes substrates by a hydrophobic mismatch.bioRxiv : the preprint server for biology · 2024
    Article
  10. Article
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  12. Transcriptional Reprogramming ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  13. Article
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  17. The STI1-domain is a flexible alpha-helical fold with a hydrophobic groove.Protein science : a publication of the Protein Society · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Michelle Y FryDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.
Shyam M SaladiDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.
William M ClemonsDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.ORCID 0000-0002-0021-889X
California Institute of Technology · US

Funding

PREDOCTORAL TRAINING IN BIOLOGY AND CHEMISTRYT32GM007616 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN · 1985 to 2019
$22.9M
NIH Pioneer AwardDP1GM105385 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CLEMONS, WILLIAM M. · 2012 to 2015
$3.3M
A New Pradigm for the Rational Expression of Integral Membrane ProteinsR01GM125063 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CLEMONS, WILLIAM M., MILLER, THOMAS FRANCIS · 2017 to 2020
$1.5M
Targeting of tail-anchored membrane proteins by the Get pathway.R01GM097572 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CLEMONS, WILLIAM M. · 2011 to 2015
$1.5M
NIGMS NIH HHS DP1 GM105385NIGMS NIH HHS R01 GM097572NIGMS NIH HHS R01 GM125063NIGMS NIH HHS T32 GM007616NIH HHS GM097572NIH HHS GM105385NIH HHS T32 GM07616
6 · The paper itself

Abstract

STI1-domains are present in a variety of co-chaperone proteins and are required for the transfer of hydrophobic clients in various cellular processes. The domains were first identified in the yeast Sti1 protein where they were referred to as DP1 and DP2. Based on hidden Markov model searches, this domain had previously been found in other proteins including the mammalian co-chaperone SGTA, the DNA damage response protein Rad23, and the chloroplast import protein Tic40. Here, we refine the domain definition and carry out structure-based sequence alignment of STI1-domains showing conservation of five amphipathic helices. Upon examinations of these identified domains, we identify a preceding helix 0 and unifying sequence properties, determine new molecular models, and recognize that STI1-domains nearly always occur in pairs. The similarity at the sequence, structure, and molecular levels likely supports a unified functional role.

Indexed as

ArabidopsisArabidopsis ProteinsDNA-Binding ProteinsHumansMembrane ProteinsMolecular ChaperonesProtein DomainsProtein Structure, SecondarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence AlignmentSequence Analysis, ProteinArabidopsis ProteinsDNA-Binding ProteinsMembrane ProteinsMolecular ChaperonesRAD23 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSGTA protein, humanTic40 protein, Arabidopsisco-chaperonesHIPhopprotein targetingSGTASti1ubiquilinsUBL-UBA

Identifiers

PMID33620121
PMCPMC7980504
OpenAlexW3129201029

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.