Evidence map›Paper›PMID 33619842›Full record

ArticleAngewandte Chemie (International ed. in English)2021

An Affinity-Based, Cysteine-Specific ATP Analog for Kinase-Catalyzed Crosslinking.

Ahmed E Fouda, Aparni K Gamage, Mary Kay H Pflum

Open access · greenAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Kinase-catalyzed crosslinking: A comparison of ATP-crosslinker analogs.Bioorganic & medicinal chemistry letters · 2024
    Article
  3. Kinase-Catalyzed Biotinylation to Identify Phosphatase Substrates (K-BIPS).Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ahmed E FoudaDepartment of Chemistry, Wayne State University, 5101, Cass Ave, Detroit, MI, 48202, USA.
Aparni K GamageDepartment of Chemistry, Wayne State University, 5101, Cass Ave, Detroit, MI, 48202, USA.
Mary Kay H PflumDepartment of Chemistry, Wayne State University, 5101, Cass Ave, Detroit, MI, 48202, USA.ORCID 0000-0002-1396-3194
Wayne State University · US

Funding

Chemical Approaches to Study Protein Post-Translational ModificationsR35GM131821 · NIGMS · WAYNE STATE UNIVERSITY · PI Mary Kay H Pflum · 2019 to 2026
$4.3M
Chemical Approaches to Mapping Cell Signaling PathwaysR01GM079529 · NIGMS · WAYNE STATE UNIVERSITY · PI PFLUM, MARY KAY H · 2009 to 2018
$2.5M
NIGMS NIH HHS R01 GM079529NIGMS NIH HHS R35 GM131821
6 · The paper itself

Abstract

Kinases mediate cell signaling pathways by catalyzing protein phosphorylation. Irregularities in kinase activity are directly associated with disease conditions. Therefore, methods to identify substrates of a particular kinase are needed to understand signaling cascades in normal and diseased states. Photocrosslinking ATP analogs provide powerful tools to study kinases by covalently linking kinases with substrates. However, the involvement of UV light and nonspecific reactivity of current ATP-photocrosslinkers challenge kinase-substrate identification. We report here an affinity-based crosslinking ATP analog, ATP-methylacrylamide (ATP-MAc), that contains a cysteine-reactive acrylamide crosslinking group, which avoids the UV irradiation and non-specific reactivity of prior analogs. Using in vitro kinase assays, ATP-MAc acts as a kinase co-substrate and covalently crosslinks only kinases containing cysteines in the active site. ATP-MAc was also able to crosslink cellular proteins in lysates, documenting compatibility with cell-based studies.

Indexed as

AcrylamideAdenosine TriphosphateBiocatalysisCross-Linking ReagentsCysteineMolecular StructureProtein KinasesUltraviolet RaysAcrylamideAdenosine TriphosphateCross-Linking ReagentsCysteineProtein Kinasesaffinity-based crosslinkersATPconjugationenzyme catalysiskinases

Identifiers

PMID33619842
PMCPMC8084585
OpenAlexW3131773860

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.