Evidence map›Paper›PMID 33619839›Full record

ArticleEMBO reports2021

Insert L1 is a central hub for allosteric regulation of USP1 activity.

Shreya Dharadhar, Willem J van Dijk, Serge Scheffers, Alexander Fish, Titia K Sixma

Open access · greenAbstract read
In one paragraph

Article in EMBO reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
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  7. ATAD5 functions as a regulatory platform for Ub-PCNA deubiquitination.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shreya DharadharDivision of Biochemistry and Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Willem J van DijkDivision of Biochemistry and Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Serge ScheffersDivision of Biochemistry and Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Alexander FishDivision of Biochemistry and Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Titia K SixmaDivision of Biochemistry and Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0001-6180-0632
The Netherlands Cancer Institute · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During DNA replication, the deubiquitinating enzyme USP1 limits the recruitment of translesion polymerases by removing ubiquitin marks from PCNA to allow specific regulation of the translesion synthesis (TLS) pathway. USP1 activity depends on an allosteric activator, UAF1, and this is tightly controlled. In comparison to paralogs USP12 and USP46, USP1 contains three defined inserts and lacks the second WDR20-mediated activation step. Here we show how inserts L1 and L3 together limit intrinsic USP1 activity and how this is relieved by UAF1. Intriguingly, insert L1 also conveys substrate-dependent increase in USP1 activity through DNA and PCNA interactions, in a process that is independent of UAF1-mediated activation. This study establishes insert L1 as an important regulatory hub within USP1 necessary for both substrate-mediated activity enhancement and allosteric activation upon UAF1 binding.

Indexed as

Nuclear ProteinsUbiquitin-Specific ProteasesAllosteric RegulationDNA RepairProliferating Cell Nuclear AntigenUbiquitinUbiquitinationNuclear ProteinsProliferating Cell Nuclear AntigenUbiquitinUbiquitin-Specific Proteasesallosterydeubiquitinating enzymeenzyme activityquantitative kinetic modellingtranslesion synthesis

Identifiers

PMID33619839
PMCPMC8024992
OpenAlexW3131270686

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.