Evidence map›Paper›PMID 33619102›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Gatorbulin-1, a distinct cyclodepsipeptide chemotype, targets a seventh tubulin pharmacological site.

Susan Matthew, Qi-Yin Chen, Ranjala Ratnayake, Charles S Fermaintt, Daniel Lucena-Agell, Francesca Bonato, Andrea E Prota, Seok Ting Lim, Xiaomeng Wang, J Fernando Díaz and 4 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
10.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 87 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Identification of a ligand-binding site on tubulin mediating the tubulin-RB3 interaction.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Review
  17. Article
  18. Design, synthesis, and bioevaluation of 1Journal of enzyme inhibition and medicinal chemistry · 2024
    Article
  19. Synthesis,RSC medicinal chemistry · 2024
    Article
  20. Globospiramine fromCells · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 4 countries.

Susan MatthewDepartment of Medicinal Chemistry, University of Florida, Gainesville, FL 32610.ORCID 0000-0003-4943-4777
Qi-Yin ChenDepartment of Medicinal Chemistry, University of Florida, Gainesville, FL 32610.ORCID 0000-0002-4364-1057
Ranjala RatnayakeDepartment of Medicinal Chemistry, University of Florida, Gainesville, FL 32610.ORCID 0000-0002-5980-2070
Charles S FermainttDepartment of Pharmacology, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229.ORCID 0000-0001-8140-5461
Daniel Lucena-AgellCentro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain.ORCID 0000-0001-7314-8696
Francesca BonatoCentro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain.
Andrea E ProtaLaboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institut, CH-5232 Villigen, Switzerland.
Seok Ting LimLee Kong Chian School of Medicine, Nanyang Technological University, 636921 Singapore.ORCID 0000-0002-5173-5715
Xiaomeng WangLee Kong Chian School of Medicine, Nanyang Technological University, 636921 Singapore.ORCID 0000-0002-1036-2764
J Fernando DíazCentro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain.ORCID 0000-0003-2743-3319
April L RisingerDepartment of Pharmacology, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229.ORCID 0000-0002-4363-3268
Valerie J PaulSmithsonian Marine Station, Fort Pierce, FL 34949.ORCID 0000-0002-4691-1569
Maria Ángela OlivaCentro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain; marian@cib.csic.es luesch@cop.ufl.edu.ORCID 0000-0002-2215-4639
Hendrik LueschDepartment of Medicinal Chemistry, University of Florida, Gainesville, FL 32610; marian@cib.csic.es luesch@cop.ufl.edu.ORCID 0000-0002-4091-7492
Consejo Superior de Investigaciones Científicas · ESNanyang Technological University · SGUniversity of Florida · USThe University of Texas Health Science Center at San Antonio · USPaul Scherrer Institute · CHSmithsonian Marine Station · US

Funding

San Antonio Biomedical Education and ResearchK12GM111726 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LECHLEITER, JAMES D, OYAJOBI, BABATUNDE OLUKAYODE · 2015 to 2024
$7.6M
Novel Targeted Anticancer Agents from Marine CyanobacteriaR01CA172310 · NCI · UNIVERSITY OF FLORIDA · PI HENDRIK LUESCH · 2013 to 2026
$5.8M
Pilot-Scale Libraries of Marine Cyanobacterial Natural ProductsP41GM086210 · NIGMS · UNIVERSITY OF FLORIDA · PI LUESCH, HENDRIK, PAUL, VALERIE JEAN · 2008 to 2010
$1.2M
NMR console upgrade for structural biology and metabolomicsS10OD028753 · OD · UNIVERSITY OF FLORIDA · PI LONG, JOANNA R · 2020 to 2020
$600k
Development of Complex Natural Product Libraries and Multidimensional Anticancer Screening PlatformsR50CA211487 · NCI · UNIVERSITY OF FLORIDA · PI RATNAYAKE, RANJALA · 2016 to 2020
$440k
NCI NIH HHS R01 CA172310NCI NIH HHS R50 CA211487NIGMS NIH HHS K12 GM111726NIGMS NIH HHS P41 GM086210NIH HHS S10 OD028753
6 · The paper itself

Abstract

Tubulin-targeted chemotherapy has proven to be a successful and wide spectrum strategy against solid and liquid malignancies. Therefore, new ways to modulate this essential protein could lead to new antitumoral pharmacological approaches. Currently known tubulin agents bind to six distinct sites at α/β-tubulin either promoting microtubule stabilization or depolymerization. We have discovered a seventh binding site at the tubulin intradimer interface where a novel microtubule-destabilizing cyclodepsipeptide, termed gatorbulin-1 (GB1), binds. GB1 has a unique chemotype produced by a marine cyanobacterium. We have elucidated this dual, chemical and mechanistic, novelty through multidimensional characterization, starting with bioactivity-guided natural product isolation and multinuclei NMR-based structure determination, revealing the modified pentapeptide with a functionally critical hydroxamate group; and validation by total synthesis. We have investigated the pharmacology using isogenic cancer cell screening, cellular profiling, and complementary phenotypic assays, and unveiled the underlying molecular mechanism by in vitro biochemical studies and high-resolution structural determination of the α/β-tubulin-GB1 complex.

Indexed as

Antineoplastic AgentsApoptosisBacterial ProteinsBinding SitesBiological ProductsCell Line, TumorColchicineCrystallography, X-RayCyanobacteriaDepsipeptidesDrug DiscoveryHCT116 CellsHumansMaytansineMicrotubulesModels, MolecularAntineoplastic AgentsBacterial ProteinsBiological ProductsColchicineDepsipeptidesMaytansinepironetinPyronesTaxoidsTubulinTubulin ModulatorsVinca Alkaloidscyanobacteriamarine natural productmicrotubulestotal synthesistubulin

Identifiers

PMID33619102
PMCPMC7936326
OpenAlexW3129858152

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.