ArticleBMC plant biology2021
The 'Tommy Atkins' mango genome reveals candidate genes for fruit quality.
Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
30 citing papers in PubMed.
- Genetic diversity and population structure analysis of mango (Mangifera indica L.) germplasm using microsatellite markers.BMC plant biology · 2026Article
- SPlant biotechnology journal · 2026Article
- Chromosome-Scale Haplotype Genome Assemblies for the Australian Mango 'Kensington Pride' and a Wild Relative, Mangifera laurina, Provide Insights Into Anthracnose-Resistance and Volatile Compound Biosynthesis Genes.Plant biotechnology journal · 2026Article
- Genome-wide analysis of conserved and novel miRNAs in mango mesocarp reveals early regulatory networks involved in postharvest heat stress response.Scientific reports · 2026Article
- Integrative genomics for mango genetics and breeding.Horticulture research · 2026Article
- Mango mesocarp fibers are a continuum of fibrous endocarp structures that are co-lignified during seed coat hardening.Frontiers in plant science · 2026Article
- Genomic resources and genetic improvement of vital tropical and subtropical fruit crops: current status and prospects.AoB PLANTS · 2025Review
- First Insights into Ploidy and Genome Size Estimation inPlants (Basel, Switzerland) · 2025Article
- Combined GC-MS and RNA-Seq Identification of the Role of the ABC Gene Family in the Formation of Mango Flavor Compounds.Plants (Basel, Switzerland) · 2025Article
- Mango pangenome reveals dramatic impacts of reference bias on population genomic analyses.Horticulture research · 2025Article
- Gapless genome assembly and population genomics highlights diversity of mango germplasms.Horticulture research · 2025Article
- A genome-wide association study identified SNP markers and candidate genes associated with morphometric fruit quality traits in mangoes.BMC genomics · 2025Article
- Analysis of gene expansion and defense-related genes in Anacardiaceae family from an evolutionary aspect.Frontiers in plant science · 2025Article
- Increased genomic predictive ability in mango using GWAS-preselected variants and fixed-effect SNPs.Frontiers in plant science · 2025Article
- Glucanases and Chitinases inMolecules (Basel, Switzerland) · 2024Article
- Genomic diversity, population structure, and genome-wide association reveal genetic differentiation and trait improvements in mango.Horticulture research · 2024Article
- A chromosome-level genome of mango exclusively from long-read sequence data.The plant genome · 2024Article
- Population structure and genetic diversity of mango (Frontiers in plant science · 2024Article
- Article
- Promoter insertion leads to polyembryony in mango - a case of convergent evolution with citrus.Horticulture research · 2023Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
14 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundMango, Mangifera indica L., an important tropical fruit crop, is grown for its sweet and aromatic fruits. Past improvement of this species has predominantly relied on chance seedlings derived from over 1000 cultivars in the Indian sub-continent with a large variation for fruit size, yield, biotic and abiotic stress resistance, and fruit quality among other traits. Historically, mango has been an orphan crop with very limited molecular information. Only recently have molecular and genomics-based analyses enabled the creation of linkage maps, transcriptomes, and diversity analysis of large collections. Additionally, the combined analysis of genomic and phenotypic information is poised to improve mango breeding efficiency.
resultsThis study sequenced, de novo assembled, analyzed, and annotated the genome of the monoembryonic mango cultivar 'Tommy Atkins'. The draft genome sequence was generated using NRGene de-novo Magic on high molecular weight DNA of 'Tommy Atkins', supplemented by 10X Genomics long read sequencing to improve the initial assembly. A hybrid population between 'Tommy Atkins' x 'Kensington Pride' was used to generate phased haplotype chromosomes and a highly resolved phased SNP map. The final 'Tommy Atkins' genome assembly was a consensus sequence that included 20 pseudomolecules representing the 20 chromosomes of mango and included ~ 86% of the ~ 439 Mb haploid mango genome. Skim sequencing identified ~ 3.3 M SNPs using the 'Tommy Atkins' x 'Kensington Pride' mapping population. Repeat masking identified 26,616 genes with a median length of 3348 bp. A whole genome duplication analysis revealed an ancestral 65 MYA polyploidization event shared with Anacardium occidentale. Two regions, one on LG4 and one on LG7 containing 28 candidate genes, were associated with the commercially important fruit size characteristic in the mapping population.
conclusionsThe availability of the complete 'Tommy Atkins' mango genome will aid global initiatives to study mango genetics.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.