Evidence map›Paper›PMID 33617524›Full record

ArticlePLoS computational biology2021

A mathematical model of the role of aggregation in sonic hedgehog signalling.

Daniel J A Derrick, Kathryn Wolton, Richard A Currie, Marcus John Tindall

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 99% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Daniel J A DerrickDepartment of Mathematics and Statistics, University of Reading, Whiteknights, Reading, United Kingdom.ORCID 0000-0003-0958-6194
Kathryn WoltonSyngenta, Jealott's Hill International Research Centre, Bracknell, Berkshire, United Kingdom.
Richard A CurrieSyngenta, Jealott's Hill International Research Centre, Bracknell, Berkshire, United Kingdom.ORCID 0000-0002-6528-3326
Marcus John TindallDepartment of Mathematics and Statistics, University of Reading, Whiteknights, Reading, United Kingdom.ORCID 0000-0001-6069-5260
Syngenta (United Kingdom) · GBUniversity of Reading · GB

Funding

Biotechnology and Biological Sciences Research Council BB/N504117/1
6 · The paper itself

Abstract

Effective regulation of the sonic hedgehog (Shh) signalling pathway is essential for normal development in a wide variety of species. Correct Shh signalling requires the formation of Shh aggregates on the surface of producing cells. Shh aggregates subsequently diffuse away and are recognised in receiving cells located elsewhere in the developing embryo. Various mechanisms have been postulated regarding how these aggregates form and what their precise role is in the overall signalling process. To understand the role of these mechanisms in the overall signalling process, we formulate and analyse a mathematical model of Shh aggregation using nonlinear ordinary differential equations. We consider Shh aggregate formation to comprise of multimerisation, association with heparan sulfate proteoglycans (HSPG) and binding with lipoproteins. We show that the size distribution of the Shh aggregates formed on the producing cell surface resembles an exponential distribution, a result in agreement with experimental data. A detailed sensitivity analysis of our model reveals that this exponential distribution is robust to parameter changes, and subsequently, also to variations in the processes by which Shh is recruited by HSPGs and lipoproteins. The work demonstrates the time taken for different sized Shh aggregates to form and the important role this likely plays in Shh diffusion.

Indexed as

Gene Expression Regulation, DevelopmentalSignal TransductionAlgorithmsCell MembraneComputer SimulationDiffusionHedgehog ProteinsHeparan Sulfate ProteoglycansHumansLipoproteinsModels, TheoreticalProtein BindingHedgehog ProteinsHeparan Sulfate ProteoglycansLipoproteins

Identifiers

PMID33617524
PMCPMC7932509
OpenAlexW3130427564

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.