Evidence map›Paper›PMID 33616677›Full record

ArticleImmunogenetics2021

Evidence for the loss and recovery of SLAMF9 during human evolution: implications on Dollo's law.

Maegan K Murphy, Justin T Moon, Alexis T Skolaris, Joseph A Mikulin, Timothy J Wilson

Abstract read
In one paragraph

Article in Immunogenetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Maegan K MurphyDepartment of Microbiology, Miami University, 700 E. High Street, Oxford, OH, 45056, USA.
Justin T MoonDepartment of Microbiology, Miami University, 700 E. High Street, Oxford, OH, 45056, USA.
Alexis T SkolarisDepartment of Microbiology, Miami University, 700 E. High Street, Oxford, OH, 45056, USA.
Joseph A MikulinDepartment of Microbiology, Miami University, 700 E. High Street, Oxford, OH, 45056, USA.
Timothy J WilsonDepartment of Microbiology, Miami University, 700 E. High Street, Oxford, OH, 45056, USA. tim.wilson@miamioh.edu.ORCID 0000-0001-8403-9401

Funding

Regulation of Type-I Interferon by SLAMF9R15AI138184 · NIAID · MIAMI UNIVERSITY OXFORD · PI WILSON, TIMOTHY JAMES · 2019 to 2019
$434k
NIAID NIH HHS R15 AI138184
6 · The paper itself

Abstract

Signaling lymphocyte activation molecule family member 9 (SLAMF9) is a cell surface protein of the CD2/SLAM family of leukocyte surface receptors. It is conserved throughout mammals and has roles in the initiation of inflammatory responses and regulation of plasmacytoid dendritic cell function. Through comparison of reference sequences encoding SLAMF9 in human, mouse, and primate sequences, we have determined that the SLAMF9 gene underwent successive mutation events, resulting in the loss of the protein and subsequent recovery of a less stable version. The mutations included a single base pair deletion in the second exon and a change in the splice acceptor site of that same exon. These changes would have had the effect of creating and later repairing a frameshift in the coding sequence. These events took place since the divergence of the human lineage from the chimpanzee-human last common ancestor and represent the first known case of the functional loss and recovery of a gene within the human lineage.

Indexed as

Biological EvolutionGenetic Predisposition to DiseaseMutationAnimalsBase SequenceHumansMammalsPhylogenyPrimatesSequence HomologySignaling Lymphocytic Activation Molecule FamilySignaling Lymphocytic Activation Molecule FamilySLAMF9 protein, humanLeukocytePrimate evolutionReceptor structureSLAMF9

Identifiers

PMID33616677
PMCPMC7898023

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.